PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT40729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 131aa MW: 14691.1 Da PI: 10.8508 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.5 | 1.3e-21 | 18 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie k qvtfskRr g++KKA+EL++LC++e+a+i+fs+ k++ + PHT40729.1 18 IEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKIFSF 64 7788889*********************************9998877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence |
MANKPSSMGR QKIKIVKIEV KNHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIIVFSPARK 60 IFSFGHSNVE SLIDRFLSRN NTNNNPIANN SLQLVEAHRN ANVCGLNLQL TQILGVVEIE 120 KKRGESLDQM R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-44 | M-type_MADS family protein |