PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT40570.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 310aa MW: 34642.7 Da PI: 6.9837

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT40570.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde+lv+ +++ G g+W++ ++ g+ R++k+c++rw +yl PHT40570.1 14 RGPWTPEEDEKLVEFINKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	47.6	3.9e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l ++++ lG++ W++Ia+ ++ gRt++++k+ w+++l PHT40570.1 67 RGPFSPEEQKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MGRTPCCDKN GLTRGPWTPE EDEKLVEFIN KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGPF SPEEQKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLSMG 120 IDPQTHEHHS DPNGLVRRPA TSSLARHLAQ WESARLEAEA RLSRESQFLV PSSVGRSETD 180 YFLRIWNSEI GESFRKFKKG EKSACHSPAS QASSCTKYGS ASGITTEVEI GVAGSPVTGS 240 NQNECMEWKI GQPYTEDFLQ GSDTCSSNAM DEDSSESALQ LLLDFPSNND MSFLGHSDSY 300 SLYPFLSESY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-122	MYB family protein