PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39683.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 426aa MW: 48835.1 Da PI: 5.621

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	242	286	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h e+Er+RR+++N++f Lr+++P K++Ka+ L Av YI++L PHT39683.1 242 HVEAERKRREKLNHRFYALRSVVPYV-----SKMDKASLLADAVTYINEL 286 889********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MENLISISSA SSQPNTLQKI LQYIIHNRQE WWIYAIFWQA SKDINNHLIL SWGDGHFRGT 60 KDTGSAKIDH GQNVMDSEWF YMVSMPQYFV AEDDLVVQAY ASATYVWLAS YYEMQLYNCD 120 RAKEANLHGL RTIVCIATPS GVVELGSNDV IQDNWEFVQF IKSLFGSNND MNTTSNLPAV 180 NQVTLEDHQK IIRDVSPQQE EDNTIKQEIT IENSDFENDD SSTINNVVNR SIKCAKKAMD 240 IHVEAERKRR EKLNHRFYAL RSVVPYVSKM DKASLLADAV TYINELKANI EDLESKLIKP 300 QNKKRHKSNN SSTTIMDQHD SHDSVSSIRT DRTNNKSLFS TRNRMEIEAK IIGSEAVIRV 360 QSLDVNYPCM RLMNAMRELE FQIYHASVSS VKDLMLQDIV IRVPEEFSNE EALKSAIATK 420 LCVIEN

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MENLISISSA SSQPNTLQKI LQYIIHNRQE WWIYAIFWQA SKDINNHLIL SWGDGHFRGT  60
KDTGSAKIDH GQNVMDSEWF YMVSMPQYFV AEDDLVVQAY ASATYVWLAS YYEMQLYNCD  120
RAKEANLHGL RTIVCIATPS GVVELGSNDV IQDNWEFVQF IKSLFGSNND MNTTSNLPAV  180
NQVTLEDHQK IIRDVSPQQE EDNTIKQEIT IENSDFENDD SSTINNVVNR SIKCAKKAMD  240
IHVEAERKRR EKLNHRFYAL RSVVPYVSKM DKASLLADAV TYINELKANI EDLESKLIKP  300
QNKKRHKSNN SSTTIMDQHD SHDSVSSIRT DRTNNKSLFS TRNRMEIEAK IIGSEAVIRV  360
QSLDVNYPCM RLMNAMRELE FQIYHASVSS VKDLMLQDIV IRVPEEFSNE EALKSAIATK  420
LCVIEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	251	ERKRRE
2	247	252	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	8e-67	bHLH family protein