PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT39581.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 277aa MW: 32126.1 Da PI: 10.2805

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT39581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.3	9.5e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+t Ed+ll +++k+ G g+W+ +++ g+ R++k+c++rw +yl PHT39581.1 14 KGPWSTKEDLLLTNYIKENGEGQWRNLPNKAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.9	4.1e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++Ed+l+++++ +lG++ W++I+ +++ gRt++++k++w+++l PHT39581.1 67 RGNFSQDEDDLIIRLHSLLGNR-WSLISGRLP-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MGRAPCCAKE GLRKGPWSTK EDLLLTNYIK ENGEGQWRNL PNKAGLLRCG KSCRLRWMNY 60 LRPGIKRGNF SQDEDDLIIR LHSLLGNRWS LISGRLPGRT DNEIKNYWNT HLIKKLKIAG 120 IHPKVHKIFN KKEPKKKPKS DKPRKKQDKK KKNNKKKDQS LVKSNNNNDT PQVVFVPKPI 180 RLMRNYSVEM LSRPCQILKS NMHASALLKS QNNAASSSDN SEELAENNKK NINIITKDDE 240 SFLFDEFCDF SNESMVDKVY EEYLQLISEK CYDPMLM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	140	PKKKPKS
2	134	152	PKKKPKSDKPRKKQDKKKK
3	135	146	KKKPKSDKPRKK
4	135	152	KKKPKSDKPRKKQDKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	1e-63	MYB family protein