PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT38374.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 446aa MW: 49339.6 Da PI: 6.2352

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT38374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.4	3.1e-17	142	191	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PHT38374.1 142 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 191 78*****************......55**********************998 PP
2	AP2	42.2	2e-13	234	284	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g PHT38374.1 234 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 284 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MFDLNVGLEE DVVETVNTFE KLNELSVGQI ENSGTSNSSI VNLESSSNAG DDEFISGSDH 60 HHHHRHPDEY AFDILTKEFF PLTGGETTAV AAPELEKQQQ WLDLSANYGG VPMEQRVLVA 120 PPPPQQRQQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR 180 AYDRAAIKFR GLDADINFNV SDYHDDLKQM ANFSKEEFVH ILRRQSTGFA RGSSKYRGVT 240 LHKCGRWEAR MGQFLGKKYI YLGLFDSEIE AARAYDKAAI KCNGREAVTN FELSTYEDEL 300 STEADNGDHN LDLNLGIAPS VLAGDQLGNT CQMGNYEVQS ASNGLPSYIG AMNSPSTEMG 360 SKLPHGNQLL TNRPLLWNGV NTSIFPTFKG TALGKGMEID SSPNWSPSVP LFSTAASSGF 420 ANSTTAAAHL PSFSNNMNFA HYYCRS

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MFDLNVGLEE DVVETVNTFE KLNELSVGQI ENSGTSNSSI VNLESSSNAG DDEFISGSDH  60
HHHHRHPDEY AFDILTKEFF PLTGGETTAV AAPELEKQQQ WLDLSANYGG VPMEQRVLVA  120
PPPPQQRQQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR  180
AYDRAAIKFR GLDADINFNV SDYHDDLKQM ANFSKEEFVH ILRRQSTGFA RGSSKYRGVT  240
LHKCGRWEAR MGQFLGKKYI YLGLFDSEIE AARAYDKAAI KCNGREAVTN FELSTYEDEL  300
STEADNGDHN LDLNLGIAPS VLAGDQLGNT CQMGNYEVQS ASNGLPSYIG AMNSPSTEMG  360
SKLPHGNQLL TNRPLLWNGV NTSIFPTFKG TALGKGMEID SSPNWSPSVP LFSTAASSGF  420
ANSTTAAAHL PSFSNNMNFA HYYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-103	AP2 family protein