PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT38311.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 446aa MW: 50530.2 Da PI: 9.9443

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT38311.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55.1	1e-17	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ PHT38311.1 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPY 51 89**************************************85 PP
2	SRF-TF	48.1	1.5e-15	215	255	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf +R++ ++KK +ELS+LC+++++ ii+ + PHT38311.1 215 FITNDSARKATFKNRKKALMKKVSELSTLCGIDACAIIYNP 255 89************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDNSPEVWPN 60 TMGAQRVLAE FKRMPEMEQS KKMMNQESFL RQRIAKANEQ LKKQSKENRE KEMTEIMYQG 120 LTGKGLQHLN LGDLNDLGWV IDQNLKEIYK RIEAVKKGAS TSSSAAAAKS HAVVAPPVEQ 180 EPAVVELGLD GMQRTQADPK KKKEKMTRKK VKLAFITNDS ARKATFKNRK KALMKKVSEL 240 STLCGIDACA IIYNPYDNSP EVWPNTMGAQ RVLAEFKRMP EMEQGKKMMN QESFFRQSIA 300 KANEQLKKQS KENREKKMTE IMYQGLTGKG LQHLNLGDLN DLGWVIDEKL KEIYKSIEAV 360 KKGALTSYTA VAAKSHAVVA PPVEQELAVV ELGLDGMQRT QAEWFTDWMN SNTSDQQIDF 420 GHGDDMILPN YNDNHSANMW PNDFYP

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDNSPEVWPN  60
TMGAQRVLAE FKRMPEMEQS KKMMNQESFL RQRIAKANEQ LKKQSKENRE KEMTEIMYQG  120
LTGKGLQHLN LGDLNDLGWV IDQNLKEIYK RIEAVKKGAS TSSSAAAAKS HAVVAPPVEQ  180
EPAVVELGLD GMQRTQADPK KKKEKMTRKK VKLAFITNDS ARKATFKNRK KALMKKVSEL  240
STLCGIDACA IIYNPYDNSP EVWPNTMGAQ RVLAEFKRMP EMEQGKKMMN QESFFRQSIA  300
KANEQLKKQS KENREKKMTE IMYQGLTGKG LQHLNLGDLN DLGWVIDEKL KEIYKSIEAV  360
KKGALTSYTA VAAKSHAVVA PPVEQELAVV ELGLDGMQRT QAEWFTDWMN SNTSDQQIDF  420
GHGDDMILPN YNDNHSANMW PNDFYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKLAFITNDSARKATFKKRK
2	22	26	KKRKK
3	200	227	KKKKEKMTRKKVKLAFITNDSARKATFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-63	M-type_MADS family protein