PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT37107.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 273aa MW: 30377.6 Da PI: 8.542

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT37107.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	211	233	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L++H ++ H PHT37107.1 211 QCPQCSLRFSSVTALVSHVQKvH 233 7******************9988 PP
2	zf-C2H2	16.2	2.9e-05	245	267	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ +L+ H + H PHT37107.1 245 VCPRCSKGFRDPVSLVEHVEKeH 267 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MGTPEFPNLG KHCFVDECRQ IDFLPFTCDC CHQVFCLEHR SYNRHHCPTA NKNDVSVVVC 60 PLCAKGVRLI PDEDPNITWE SHVNTECDPS NYEKATKKRK CPVPGCREIL TFSNIIKCRE 120 CTIDHCLKHR FGPDHKCPGR KKPESSAFPF VNFRSGSRQA EPKKAPATSS SSWTSTFFKA 180 AEAGMAKLGS GRGQSSNATN HSGRASRQVE QCPQCSLRFS SVTALVSHVQ KVHEKNGVMN 240 LTVDVCPRCS KGFRDPVSLV EHVEKEHKGT SKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-116	C2H2 family protein