PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT34519.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 465aa MW: 50453.1 Da PI: 9.2288

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT34519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	123	1.3e-38	176	253	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ ls+akey+r+h+vC+ hsk+p+v+v+g+ +rfCqqCsrfh++sefDe+krsCrrrL++hn+rrrk+q+ PHT34519.1 176 RCQVEGCNLVLSSAKEYYRKHRVCDSHSKCPKVIVAGVARRFCQQCSRFHSVSEFDEKKRSCRRRLSDHNARRRKPQQ 253 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MEWNVKWDWG NLVMFGSKAS ESPKELQLTD WGVEEEGELD GGSFNLSSGG SGSGGYGSDV 60 KCGSSVKSSI SASTDSSPKE GFKAPNFAFE VFDVSNEDRS KKLEPSKVEV FRNSPPMEAS 120 VGSVEPVIGL KLGKRICETI GGGSSAKVSS SFPNPTSSTA ATKKAKSSSQ NTPIPRCQVE 180 GCNLVLSSAK EYYRKHRVCD SHSKCPKVIV AGVARRFCQQ CSRFHSVSEF DEKKRSCRRR 240 LSDHNARRRK PQQETIQFNS AKLSSLFYGN SQPMNFVLNH AQLIHSRAAA NSTWERTQDS 300 KFSITRGFTP KAERTGSTNG KSLLEGIQFS GGVGAQSNAS SLFLPSKGTT AEVSNQGAKE 360 STFNMVTGPE FPRALSLLST NSWGSSEPET VSLRHANQTS MPEQMMQAIP QGVPHISSQY 420 WQGGQHSSGP RDHTLAANSH SGGSLQEMGL FKAPFDTYFY LNAFN

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MEWNVKWDWG NLVMFGSKAS ESPKELQLTD WGVEEEGELD GGSFNLSSGG SGSGGYGSDV  60
KCGSSVKSSI SASTDSSPKE GFKAPNFAFE VFDVSNEDRS KKLEPSKVEV FRNSPPMEAS  120
VGSVEPVIGL KLGKRICETI GGGSSAKVSS SFPNPTSSTA ATKKAKSSSQ NTPIPRCQVE  180
GCNLVLSSAK EYYRKHRVCD SHSKCPKVIV AGVARRFCQQ CSRFHSVSEF DEKKRSCRRR  240
LSDHNARRRK PQQETIQFNS AKLSSLFYGN SQPMNFVLNH AQLIHSRAAA NSTWERTQDS  300
KFSITRGFTP KAERTGSTNG KSLLEGIQFS GGVGAQSNAS SLFLPSKGTT AEVSNQGAKE  360
STFNMVTGPE FPRALSLLST NSWGSSEPET VSLRHANQTS MPEQMMQAIP QGVPHISSQY  420
WQGGQHSSGP RDHTLAANSH SGGSLQEMGL FKAPFDTYFY LNAFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	250	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	5e-52	SBP family protein