PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT31246.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 354aa MW: 39577.9 Da PI: 4.2

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT31246.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.6e-19	55	108	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k PHT31246.1 55 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 108 56689************************************************9 PP
2	HD-ZIP_I/II	128.7	2.3e-41	54	145	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e+L+ ++e+L +e+ PHT31246.1 54 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESLKLDNEALIKEIC 145 69*************************************************************************************99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MKRLGSSDSL GALMSMCPST ADDQNHVYSS RDFQSMLEGL DEEGCVEESG HVSEKKRRLS 60 VEQVKALEKN FEVENKLEPE RKVKLAQELG LQPRQVAVWF QNRRARWKTK QLERDYNVLK 120 ANFDSLKHNY ESLKLDNEAL IKEICELKSK VYGGENGESR GAVVVVKEEA MESEDDDKLM 180 NEQNKHPNDG NNSNNNLLDE EEEEEDQEDD EAINATNVAS TIFADFNKDG SSDSDNSSSI 240 LNEDSSPNAA ISSSGAFLIS NDGSGGGCGV GCSSSSSLHF CFNFTESSSK SILGDTQANS 300 CYTYQPTTTT TQYNVKMEEH NFFNTEESCS TFFSDEQAPT LQWYCPEDWN FKDS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MKRLGSSDSL GALMSMCPST ADDQNHVYSS RDFQSMLEGL DEEGCVEESG HVSEKKRRLS  60
VEQVKALEKN FEVENKLEPE RKVKLAQELG LQPRQVAVWF QNRRARWKTK QLERDYNVLK  120
ANFDSLKHNY ESLKLDNEAL IKEICELKSK VYGGENGESR GAVVVVKEEA MESEDDDKLM  180
NEQNKHPNDG NNSNNNLLDE EEEEEDQEDD EAINATNVAS TIFADFNKDG SSDSDNSSSI  240
LNEDSSPNAA ISSSGAFLIS NDGSGGGCGV GCSSSSSLHF CFNFTESSSK SILGDTQANS  300
CYTYQPTTTT TQYNVKMEEH NFFNTEESCS TFFSDEQAPT LQWYCPEDWN FKDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	84	KKRRLSVEQVKALEKNFEVENKLEPERKVK
2	103	111	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	3e-68	HD-ZIP family protein