PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29986.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 660aa MW: 74516.8 Da PI: 7.5663

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.8	9.1e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCda++ +i+fs tgkl+eyss PHT29986.1 9 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDADIGLIVFSATGKLFEYSS 59 68***********************************************96 PP
2	K-box	44.6	6e-16	77	173	3	99
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ ++l++++ +s ++ +a L + + re+R+l Ge+L+ L l eL++Le+ +e +++++ + K + ++++i+ l++k +lqeen +L+++ + PHT29986.1 77 NNTPEQLQSSNLQSEKKTYATLSRDFVEKNRELRQLHGEELQGLGLDELMKLEKLVEGGISRVLKIKGDKFMREISSLKRKATQLQEENSQLKQQSQ 173 455666999*****************9**************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MVRQKIQIKK IDNLTARQVT FSKRRRGLFK KAQELSTLCD ADIGLIVFSA TGKLFEYSSS 60 SMMQLIEKHK MQSERDNNTP EQLQSSNLQS EKKTYATLSR DFVEKNRELR QLHGEELQGL 120 GLDELMKLEK LVEGGISRVL KIKGDKFMRE ISSLKRKATQ LQEENSQLKQ QSQARLNEEG 180 QNAIEQGHSA DSITNNRSLV NSSHQDCNDS DTSLKLGRNG KRIIPWGMNH QQRVTLNLTS 240 KRLQVLHMDK NDYYGGESSS LNLIQLWKRF RGNDKPPEEL GTSKEYNVDM IPKFAMANGT 300 LVRVLIHTDV TKYLNFKAVD GSFVYNKGKI YKVPATDVEA LKSPLMGLFE KRRARKFFLY 360 VQDFDESDPK THEGMDLNKI TAKEFIAKYE LEDDTIDFIG HALALFTDDN YLAQPAMDFV 420 KRVKLYAESL ARFQAGSPYI YPMYGLGELP QAFARLSAVY GGTYMLNKPQ CKVEFDEGGK 480 VVGVTSEGET AKCKKVVCDP SYLPDKVQKV GKVARAICIM SHPIPNTNDS HSAQVILPQK 540 QLGRKSDMYL FCCSYFHNVA PKGKYIAFVS TEAETDDPEK ELKPGVDILG AVDEIFYETY 600 DRFVPSHDSA ADNCFISKSY DPTTHFESTV MDVLDMYSKI TGKVVDLSVD LSAASAAAEE

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MVRQKIQIKK IDNLTARQVT FSKRRRGLFK KAQELSTLCD ADIGLIVFSA TGKLFEYSSS  60
SMMQLIEKHK MQSERDNNTP EQLQSSNLQS EKKTYATLSR DFVEKNRELR QLHGEELQGL  120
GLDELMKLEK LVEGGISRVL KIKGDKFMRE ISSLKRKATQ LQEENSQLKQ QSQARLNEEG  180
QNAIEQGHSA DSITNNRSLV NSSHQDCNDS DTSLKLGRNG KRIIPWGMNH QQRVTLNLTS  240
KRLQVLHMDK NDYYGGESSS LNLIQLWKRF RGNDKPPEEL GTSKEYNVDM IPKFAMANGT  300
LVRVLIHTDV TKYLNFKAVD GSFVYNKGKI YKVPATDVEA LKSPLMGLFE KRRARKFFLY  360
VQDFDESDPK THEGMDLNKI TAKEFIAKYE LEDDTIDFIG HALALFTDDN YLAQPAMDFV  420
KRVKLYAESL ARFQAGSPYI YPMYGLGELP QAFARLSAVY GGTYMLNKPQ CKVEFDEGGK  480
VVGVTSEGET AKCKKVVCDP SYLPDKVQKV GKVARAICIM SHPIPNTNDS HSAQVILPQK  540
QLGRKSDMYL FCCSYFHNVA PKGKYIAFVS TEAETDDPEK ELKPGVDILG AVDEIFYETY  600
DRFVPSHDSA ADNCFISKSY DPTTHFESTV MDVLDMYSKI TGKVVDLSVD LSAASAAAEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	5e-50	MIKC_MADS family protein