PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT28862.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family BBR-BPC
Protein Properties Length: 310aa    MW: 34749.6 Da    PI: 9.8658
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT28862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind316.49.2e-9713101301
   GAGA_bind   1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerd...........................maflqrdkalaer 70 
                 md +gs++ rn+g+ ep  + lk nlglqlmss+ e+ +  + r+   +++++++ + d                           m++ +rd+++++ 
  PHT28862.1   1 MDGNGSMNiRNWGFLEPPtTVLKGNLGLQLMSSMDEKPHFGNLRDYHYHHQQQTH-QPDhptvmastnggafhhhrvcglsespmpMEY-MRDAWVNH- 96 
                 999*************99899*************777666655555444444444.333477788888889999999************.*******9. PP

   GAGA_bind  71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
                      + ++k+l++l +++       +g++ l++t+s++s+q+ ++p+l +  +         ++++ +++++   +kk+    ++ + k++k kk+kk
  PHT28862.1  97 ----KDYREKYLNVLSANHP----YLTGYGFLPETSSAQSMQMYQQPNLVKVETA------PLVEEVCQERDTGGIAKKRG-ADKSPVLKSPKPKKAKK 180
                 ....5667899999998776....55799**************766666543333......22333334343333333333.44455678888888888 PP

   GAGA_bind 170 ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268
                  ++++k++++++   +r++a++ks ++++ng+++D+s++P+P+CsCtG+++qCY+WG+GGWqSaCCtt++S yPLP++ krrg+RiagrKmS gaf k+
  PHT28862.1 181 ATTAPKDDSTPSF--PRTRAPRKSAEVNINGINMDISRIPIPICSCTGSSQQCYRWGCGGWQSACCTTNLSSYPLPMNIKRRGSRIAGRKMSLGAFMKV 277
                 8888876666665..89********************************************************************************** PP

   GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 LekLa+eGy++snp+DL+ hWAkHGtnkfvtir
  PHT28862.1 278 LEKLASEGYNFSNPIDLRPHWAKHGTNKFVTIR 310
                 ********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MDGNGSMNIR NWGFLEPPTT VLKGNLGLQL MSSMDEKPHF GNLRDYHYHH QQQTHQPDHP  60
TVMASTNGGA FHHHRVCGLS ESPMPMEYMR DAWVNHKDYR EKYLNVLSAN HPYLTGYGFL  120
PETSSAQSMQ MYQQPNLVKV ETAPLVEEVC QERDTGGIAK KRGADKSPVL KSPKPKKAKK  180
ATTAPKDDST PSFPRTRAPR KSAEVNINGI NMDISRIPIP ICSCTGSSQQ CYRWGCGGWQ  240
SACCTTNLSS YPLPMNIKRR GSRIAGRKMS LGAFMKVLEK LASEGYNFSN PIDLRPHWAK  300
HGTNKFVTIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.12e-79BBR-BPC family protein