PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT27856.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 403aa MW: 44996.4 Da PI: 6.7882

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT27856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	116.3	3.8e-36	98	307	2	208
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl....fse..vsPilkf 93 elL + A+ v+++++ + ++lL+ ++ as +g+++q+++ yf+ AL +r+ r++ ++ + + + +n ++e ++ l f + + + + PHT27856.1 98 AELLQASAQLVATRSFDRGRKLLSLCNQSASATGTAVQKIVYYFADALLHRIDRETGKIPFTGEEDMNVYTNdTEEFIMD--LepaeFAKrpLYAYRQA 194 5789999*********************************************66665544333222222213333333..33465543225567899 PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeel..gvpfefnvlvakrledl 189 ++lt qaIl+++ ++++vH iD++++ GlQW +++q a+R+e +l+iT+vg+ s++++e++g+rL+ fA+e+ +v+f f++ v+++l++l PHT27856.1 195 TQLTGIQAILDSTITAKKVHLIDLSVKSGLQWTTFMQVVADRDEFlLDHLKITAVGR----STKMMEAVGRRLSAFAAETlqNVSFCFKT-VVSDLKNL 288 99*************************************76256*****....99**********9865699999999.7999 PP GRAS 190 eleeLrvkpgEalaVnlvl 208 e+++++v+ +E++aV + PHT27856.1 289 ETDSFEVEADEVVAVYSDT 307 *************8765 PP
2	GRAS	21.6	2.4e-07	320	401	294	374
GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdrpLvsvSaWr 374 i+++++ g+e + rh +l+ Wr+ + ++ + + +ls++ +qa+ll + k++g + e ++lv+ k+ p++s+ W+ PHT27856.1 320 IRSMITYHGEETVPRHGNLQVWRDLFIRFHMVETELSQSSLCQASLLFELSKFRGlCTFELYGKWLVISCKGTPIISAVTWK 401 899***********************************************999678888899***************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MASSSSHARN KKKANRCGDH AEGRQGSLRQ DLNESSFQLS SGASGSLVLS APTIMKIAKQ 60 RLLNHISQKS DAYSIIFNPL TAANSGVSPE LVQDVDLAEL LQASAQLVAT RSFDRGRKLL 120 SLCNQSASAT GTAVQKIVYY FADALLHRID RETGKIPFTG EEDMNVYTND TEEFIMDLEP 180 AEFAKRPLYA YRQATQLTGI QAILDSTITA KKVHLIDLSV KSGLQWTTFM QVVADRDEFL 240 LDHLKITAVG RSTKMMEAVG RRLSAFAAET LQNVSFCFKT VVSDLKNLET DSFEVEADEV 300 VAVYSDTILW TVLPWPNNII RSMITYHGEE TVPRHGNLQV WRDLFIRFHM VETELSQSSL 360 CQASLLFELS KFRGLCTFEL YGKWLVISCK GTPIISAVTW KFQ

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MASSSSHARN KKKANRCGDH AEGRQGSLRQ DLNESSFQLS SGASGSLVLS APTIMKIAKQ  60
RLLNHISQKS DAYSIIFNPL TAANSGVSPE LVQDVDLAEL LQASAQLVAT RSFDRGRKLL  120
SLCNQSASAT GTAVQKIVYY FADALLHRID RETGKIPFTG EEDMNVYTND TEEFIMDLEP  180
AEFAKRPLYA YRQATQLTGI QAILDSTITA KKVHLIDLSV KSGLQWTTFM QVVADRDEFL  240
LDHLKITAVG RSTKMMEAVG RRLSAFAAET LQNVSFCFKT VVSDLKNLET DSFEVEADEV  300
VAVYSDTILW TVLPWPNNII RSMITYHGEE TVPRHGNLQV WRDLFIRFHM VETELSQSSL  360
CQASLLFELS KFRGLCTFEL YGKWLVISCK GTPIISAVTW KFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50650.1	9e-17	GRAS family protein