PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G50650.1
Common NameSCL7, T3A5.30
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 542aa    MW: 60779.1 Da    PI: 4.8571
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G50650.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.43e-10419354222374
         GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdi 119
                   +L r++e +s++gdp+qR+  yf+eAL+++ ++         +ps++s+++ ++ + ++k++++++P+ kf+hltaNqaIlea+++++ +Hi+Df+i
  AT3G50650.1 193 DTLIRIKESVSESGDPIQRVGYYFAEALSHKETE---------SPSSSSSSSLEDFILSYKTLNDACPYSKFAHLTANQAILEATNQSNNIHIVDFGI 281
                  5799**************************9998.........677777778********************************************** PP

         GRAS 120 sqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214
                   qG+QW aLlqaLa+R++g+p ++Ri g+ +p+ g     +l +tg+rL++fA+ l+++fef + v + ++ l+ +++rv+p+E+l+Vn++l+l++ll
  AT3G50650.1 282 FQGIQWSALLQALATRSSGKPtRIRISGIPAPSLGdsPGPSLIATGNRLRDFAAILDLNFEFYP-VLTPIQLLNGSSFRVDPDEVLVVNFMLELYKLL 378
                  *****************77776**********99988999************************.799****************************** PP

         GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.....rre 307
                  de++++     + L+l +sl+P++v++ e e+++n+ +F++r+ ++l++ysa+f+sle +l r+s+er  vEr+l+gr+i+++v    ++     r+ 
  AT3G50650.1 379 DETATTVG---TALRLARSLNPRIVTLGEYEVSLNRVEFANRVKNSLRFYSAVFESLEPNLDRDSKERLRVERVLFGRRIMDLVRSDDDNnkpgtRFG 473
                  ****9999...*************************************************************************97765433344889 PP

         GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                   +e++e+Wr  +e+aGF+pv+ s++a++qaklll +++ s  y++ e++  ++ l W++ pL++vS+Wr
  AT3G50650.1 474 LMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNySTLYSLVESEPGFIsLAWNNVPLLTVSSWR 542
                  9*************************************9999*****9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.791147520IPR005202Transcription factor GRAS
PfamPF035141.1E-101193542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQLIK QKQQQQSQHQ QQEEQEQEPN PWPNPSFGFT LPGSGFSDPF  60
QVTNDPGFHF PHLEHHQNAA VASEEFDSDE WMESLINGGD ASQTNPDFPI YGHDPFVSFP  120
SRLSAPSYLN RVNKDDSASQ QLPPPPASTA IWSPSPPSPQ HPPPPPPQPD FDLNQPIFKA  180
IHDYARKPET KPDTLIRIKE SVSESGDPIQ RVGYYFAEAL SHKETESPSS SSSSSLEDFI  240
LSYKTLNDAC PYSKFAHLTA NQAILEATNQ SNNIHIVDFG IFQGIQWSAL LQALATRSSG  300
KPTRIRISGI PAPSLGDSPG PSLIATGNRL RDFAAILDLN FEFYPVLTPI QLLNGSSFRV  360
DPDEVLVVNF MLELYKLLDE TATTVGTALR LARSLNPRIV TLGEYEVSLN RVEFANRVKN  420
SLRFYSAVFE SLEPNLDRDS KERLRVERVL FGRRIMDLVR SDDDNNKPGT RFGLMEEKEQ  480
WRVLMEKAGF EPVKPSNYAV SQAKLLLWNY NYSTLYSLVE SEPGFISLAW NNVPLLTVSS  540
WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1311745421375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.429390.0flower| seed| vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425658070.0
Genevisible252173_at0.0
Expression AtlasAT3G50650-
AtGenExpressAT3G50650-
ATTED-IIAT3G50650-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, sepals, filaments of stamen, and in the central cylinder of the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G50650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G50650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2292520.0AK229252.1 Arabidopsis thaliana mRNA for scarecrow-like 7, complete cds, clone: RAFL16-53-M18.
GenBankAL1329790.0AL132979.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T3A5.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190634.10.0GRAS family transcription factor
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLA0A384KPG40.0A0A384KPG4_ARATH; Uncharacterized protein
TrEMBLC0SVE00.0C0SVE0_ARATH; Uncharacterized protein At3g50650 (Fragment)
STRINGAT3G50650.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Representative plantOGRP67991519
Publications ? help Back to Top
  1. Pysh LD,Wysocka-Diller JW,Camilleri C,Bouchez D,Benfey PN
    The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes.
    Plant J., 1999. 18(1): p. 111-9
    [PMID:10341448]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Bolle C
    The role of GRAS proteins in plant signal transduction and development.
    Planta, 2004. 218(5): p. 683-92
    [PMID:14760535]
  4. Tian C,Wan P,Sun S,Li J,Chen M
    Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
    Plant Mol. Biol., 2004. 54(4): p. 519-32
    [PMID:15316287]
  5. Gao MJ,Parkin I,Lydiate D,Hannoufa A
    An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase.
    Plant Mol. Biol., 2004. 55(3): p. 417-31
    [PMID:15604690]
  6. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  7. Lee MH, et al.
    Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.
    Plant Mol. Biol., 2008. 67(6): p. 659-70
    [PMID:18500650]
  8. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  9. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]