PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT26854.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 893aa MW: 100179 Da PI: 6.6537

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT26854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47	5.8e-15	449	493	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g +t+ q++s+ qk+ PHT26854.1 449 REKWTEEEHQRFLEALKLYGRA-WRQIEEYVG-SKTAIQIRSHAQKF 493 789***************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 893 aa Download sequence
MTNGKRAEKN KDIMELKDDV LVWEIISRLP LKLAVQCKVL NKDIKGRISD PEFLRTWFRR 60 QEDPSTQLIY ILNGMPRTLH RVTLHPIPNT QIETPLSCDI EILASCNGLI LIDFDHVTKY 120 CVFNPLTGEH QLIPYPLMPS NRLHSMGFAV DYPDSDQYKL VTISEHVKYS HRFYKFSLLS 180 SQQPGFWHEI KQKTHSFKPF PEGNPPVYWC GSLYWLRSDG SVVAFDTRIK ASRVIYARFI 240 PQYDFNYGNI STGNNIWLGT AQGVLTLACI FRRLIVLATY DNARSSWTVT HTLDNFISRS 300 SGFVAGFPVW IDSKQVSFLM ERPLELMYYV DLYEYDTEIN GYRKGPEWHS VGYPMYYFHP 360 TLASVHQAPS KNAEADDLLY IAAKLNYIRG FIIEGTSQFQ NQAEGAWQGA SSVNSSKLEI 420 VATQEKAPTC LANKNALKVR KPYTITKQRE KWTEEEHQRF LEALKLYGRA WRQIEEYVGS 480 KTAIQIRSHA QKFFAKVARD SVNDGDESLN AIDIPPPRPK KKPLHPYPRK MVDSPVANKA 540 VSGQPESSPS PNVSGRVSCS PDSVLSAIGS GVSEYPVAEQ QNSRFSPASC TTDVHTANII 600 SAENDDESMT SNSSTVEEVH IELKPISAST SLIANSDMVI PLEACKLSAL PCYLGCTLTS 660 GLYVPLQECD IVHRENSCNG EKLAVEAPSA SIKLFGQTVF IPDANNLALQ APYNCNSLPS 720 KSTEKEIKIS SEDVLHSFQA NQANSQFMLA MVPGNMIPPA SWLSHNMLEN NPEITTVFPT 780 TVSWWSWYQD LVNQSILSCD QTAMETAVHC QGLKDEEPQR EGSSTGSSIG SASEVDNGNR 840 SSETAESKCT AKSYKWNNSK GFVPYKRCLA ERDDKSSGAV LEERESQRVR VCS

Sequence ? help Back to Top

Protein Sequence Length: 893 aa Download sequence

MTNGKRAEKN KDIMELKDDV LVWEIISRLP LKLAVQCKVL NKDIKGRISD PEFLRTWFRR  60
QEDPSTQLIY ILNGMPRTLH RVTLHPIPNT QIETPLSCDI EILASCNGLI LIDFDHVTKY  120
CVFNPLTGEH QLIPYPLMPS NRLHSMGFAV DYPDSDQYKL VTISEHVKYS HRFYKFSLLS  180
SQQPGFWHEI KQKTHSFKPF PEGNPPVYWC GSLYWLRSDG SVVAFDTRIK ASRVIYARFI  240
PQYDFNYGNI STGNNIWLGT AQGVLTLACI FRRLIVLATY DNARSSWTVT HTLDNFISRS  300
SGFVAGFPVW IDSKQVSFLM ERPLELMYYV DLYEYDTEIN GYRKGPEWHS VGYPMYYFHP  360
TLASVHQAPS KNAEADDLLY IAAKLNYIRG FIIEGTSQFQ NQAEGAWQGA SSVNSSKLEI  420
VATQEKAPTC LANKNALKVR KPYTITKQRE KWTEEEHQRF LEALKLYGRA WRQIEEYVGS  480
KTAIQIRSHA QKFFAKVARD SVNDGDESLN AIDIPPPRPK KKPLHPYPRK MVDSPVANKA  540
VSGQPESSPS PNVSGRVSCS PDSVLSAIGS GVSEYPVAEQ QNSRFSPASC TTDVHTANII  600
SAENDDESMT SNSSTVEEVH IELKPISAST SLIANSDMVI PLEACKLSAL PCYLGCTLTS  660
GLYVPLQECD IVHRENSCNG EKLAVEAPSA SIKLFGQTVF IPDANNLALQ APYNCNSLPS  720
KSTEKEIKIS SEDVLHSFQA NQANSQFMLA MVPGNMIPPA SWLSHNMLEN NPEITTVFPT  780
TVSWWSWYQD LVNQSILSCD QTAMETAVHC QGLKDEEPQR EGSSTGSSIG SASEVDNGNR  840
SSETAESKCT AKSYKWNNSK GFVPYKRCLA ERDDKSSGAV LEERESQRVR VCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	1e-37	MYB_related family protein