PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126918.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GATA

Protein Properties

Length: 371aa MW: 40453.3 Da PI: 6.5048

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.3	1.8e-17	258	292	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l XP_027126918.1 258 CLHCGSEKTPQWRTGPMGPKTLCNACGVRYKSGRL 292 99*****************************9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MEASSEFFVG GYFSHAGDNE FGHKSMENQN ITTGNSNNFT VDDLLDFPKE DEVMTDAFFD 60 SITGNSGESS SLTVVDSCNS SVSGGDRQFN GNISCRSFTD TQFSGSELCV PYDDLAELEW 120 LSNFVEESFS SDDLHNLHLI SPTTNFKAPS ASSAATANAT TDTSSSAATI STNNDNSNSS 180 SPVFPSDVSF PGKARSKRSR AAPCNWASRL LLLASPATSS SEPTNDVNTP NPMSVTIKAP 240 KQAPSRKRET TETPGRQCLH CGSEKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA 300 SPTFVSAKHS NSHRKVLELR RQKELQRQQQ QQLLSQASIF GVSNGGDEYL IRHHHHHPHQ 360 QNVGPDHRLM I

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MEASSEFFVG GYFSHAGDNE FGHKSMENQN ITTGNSNNFT VDDLLDFPKE DEVMTDAFFD  60
SITGNSGESS SLTVVDSCNS SVSGGDRQFN GNISCRSFTD TQFSGSELCV PYDDLAELEW  120
LSNFVEESFS SDDLHNLHLI SPTTNFKAPS ASSAATANAT TDTSSSAATI STNNDNSNSS  180
SPVFPSDVSF PGKARSKRSR AAPCNWASRL LLLASPATSS SEPTNDVNTP NPMSVTIKAP  240
KQAPSRKRET TETPGRQCLH CGSEKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA  300
SPTFVSAKHS NSHRKVLELR RQKELQRQQQ QQLLSQASIF GVSNGGDEYL IRHHHHHPHQ  360
QNVGPDHRLM I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	7e-65	GATA family protein