PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027126784.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 329aa    MW: 36421.3 Da    PI: 10.3746
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027126784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind318.62e-9713291301
       GAGA_bind   1 mdddgsre.rnkgyyepa..aslk..enlglqlmssiaerdaki..rern.lalsekkaavaerd..........................mafl 61 
                     md +gs++ rn+g++ep+  ++lk   +lglqlms+++e+      re++    +++++a+                              +++ 
  XP_027126784.1   1 MDGNGSMNlRNWGFFEPTptPALKgaGHLGLQLMSTMTEKPLFGggRENHpYQHHHPHQAY---SsimapstnggpyhhhrvggisessipVDY- 91 
                     999*************776677773369*********988765555333212233344444...1223444455555555689******99999. PP

       GAGA_bind  62 qrdkalaernkalv..erdnk..llalllvensla....salpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakek 147
                     +rd +l++r+k l   + ++    l+l ++++++     ++   +++vl++t+s++s+q++++ + l+++ v+ +ee      +i e++ ++  +
  XP_027126784.1  92 MRDVWLNHREKYLNalPNNQHphQLQLHPQQQNQHhsqhHHPQINYGVLPETSSAHSVQMIQQsSLLNNDDVGPQEE------EICETRGVVGAV 180
                     9******999865411333330133333333333255534445689**************77724455555553333......455555555555 PP

       GAGA_bind 148 kkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvy 242
                     kk+     +k+pk++kakk+kk ++ ++++++++   +r++a+kks ++ +ng+s+D+s++P+PvC+CtG  +qCY+WG+GGWqSaCCtt +Svy
  XP_027126784.1 181 KKRG---GGKVPKSPKAKKPKKAPKPPREESSRSL--HRARAPKKSAEVIINGISMDISGIPIPVCTCTGNAQQCYRWGAGGWQSACCTTGMSVY 270
                     5544...6788888888888886666655555555..79******************************************************** PP

       GAGA_bind 243 PLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     PLP+s+krrgaRiagrKmS gaf+k+LekLa+eG+++snp+DL++hWAkHGtnkfvtir
  XP_027126784.1 271 PLPMSAKRRGARIAGRKMSLGAFRKVLEKLASEGFNFSNPIDLRNHWAKHGTNKFVTIR 329
                     **********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MDGNGSMNLR NWGFFEPTPT PALKGAGHLG LQLMSTMTEK PLFGGGRENH PYQHHHPHQA  60
YSSIMAPSTN GGPYHHHRVG GISESSIPVD YMRDVWLNHR EKYLNALPNN QHPHQLQLHP  120
QQQNQHHSQH HHPQINYGVL PETSSAHSVQ MIQQSSLLNN DDVGPQEEEI CETRGVVGAV  180
KKRGGGKVPK SPKAKKPKKA PKPPREESSR SLHRARAPKK SAEVIINGIS MDISGIPIPV  240
CTCTGNAQQC YRWGAGGWQS ACCTTGMSVY PLPMSAKRRG ARIAGRKMSL GAFRKVLEKL  300
ASEGFNFSNP IDLRNHWAKH GTNKFVTIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.15e-67BBR-BPC family protein