PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126551.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 790aa MW: 87469.1 Da PI: 7.2003

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.6e-07	56	98	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I +++ + q++++++ + XP_027126551.1 56 AWTHQEEESFFSALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 98 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence
MTLKTQMEPQ ISLDCNSCLH PKNHVKGEGI PGSTISLQDK NASTLPVKRP TRQWAAWTHQ 60 EEESFFSALR QVGKNFEKIT CRVQSKNKDQ VRHYYYRLVR RMNKLLGPEL CLDAKNSKDT 120 NAAMLRWWSL LEKYSCKASK LHLKPRRFKL FVETLETQLL KDRKKNVRKR ASQGENSSIT 180 APTGLPNQGK VSCHESRVVK DVLIDGQNIP KPGIGKGSSI HRHLNVGINR GNYKSGPSAL 240 KTARYQRKAG ATSKAAYKRW EKAAIAGVSL VADAAEHLER TATDREVEHV EDAHVQNAFD 300 YCGKDMPSIL NNMQSSMKLK LQLFPVDEAT RRALEMDKHN PYLELTLSTR KKISSVLEHL 360 NRKWGQSSIA SGELMLLPYF VQQANQVSCP KWAKDSVLSA SDVYAQIGNP PVFRLRYGWF 420 PHADPGSATS LASLSCPTQH HTETSIVNEQ IVDTTPKSSP PTYQEAENLL GIHEGLLSAA 480 KMTTLTPSRL PNHTIGCAGI GPDVNTVKSS NHTAAHVLNR RESTTDTVVV QEENLDDLRP 540 HKTVALSAGE WADSLTNISI GDLLTEASHN GEVNCIDSTE LRNSHCLQQI PFSCDSFDAA 600 IAAHIYKHQS RSALQPPLHT NTSSIWDGEE TCDAFVFQKN SVFSEEFQNA SRISPPETSR 660 EITSTSSAAS GKAQESDPEE PLTDDPRHGD IVDKCHSDQH SFDDSQRELN GLTDIYWPDS 720 LGALDLDISS CRYRSDDLIL SDSLGGLNRL IASSLDAFQS CSFFGSDKKE SASAVEAGEI 780 ASDLKISTQV

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence

MTLKTQMEPQ ISLDCNSCLH PKNHVKGEGI PGSTISLQDK NASTLPVKRP TRQWAAWTHQ  60
EEESFFSALR QVGKNFEKIT CRVQSKNKDQ VRHYYYRLVR RMNKLLGPEL CLDAKNSKDT  120
NAAMLRWWSL LEKYSCKASK LHLKPRRFKL FVETLETQLL KDRKKNVRKR ASQGENSSIT  180
APTGLPNQGK VSCHESRVVK DVLIDGQNIP KPGIGKGSSI HRHLNVGINR GNYKSGPSAL  240
KTARYQRKAG ATSKAAYKRW EKAAIAGVSL VADAAEHLER TATDREVEHV EDAHVQNAFD  300
YCGKDMPSIL NNMQSSMKLK LQLFPVDEAT RRALEMDKHN PYLELTLSTR KKISSVLEHL  360
NRKWGQSSIA SGELMLLPYF VQQANQVSCP KWAKDSVLSA SDVYAQIGNP PVFRLRYGWF  420
PHADPGSATS LASLSCPTQH HTETSIVNEQ IVDTTPKSSP PTYQEAENLL GIHEGLLSAA  480
KMTTLTPSRL PNHTIGCAGI GPDVNTVKSS NHTAAHVLNR RESTTDTVVV QEENLDDLRP  540
HKTVALSAGE WADSLTNISI GDLLTEASHN GEVNCIDSTE LRNSHCLQQI PFSCDSFDAA  600
IAAHIYKHQS RSALQPPLHT NTSSIWDGEE TCDAFVFQKN SVFSEEFQNA SRISPPETSR  660
EITSTSSAAS GKAQESDPEE PLTDDPRHGD IVDKCHSDQH SFDDSQRELN GLTDIYWPDS  720
LGALDLDISS CRYRSDDLIL SDSLGGLNRL IASSLDAFQS CSFFGSDKKE SASAVEAGEI  780
ASDLKISTQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	MYB_related family protein