PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126301.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 413aa MW: 43703 Da PI: 7.9818

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.2	4.9e-41	76	250	2	125
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + XP_027126301.1 76 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrssy 170 589******************************************************************99987777777777555556667778 PP TCP 89 .......................................kaaksaakskksqksaasalnlakesrakarar.......arer 125 s + + k++ ++++++n + s a a a ar+r XP_027126301.1 171 fspnfsmpprrslfqgiglstdnspstttllnfqsgninP---SGMLQAKQELRENNTHNTLDLSDAAAAAAageesplARKR 250 8888888999999999999999888999999998885432...3333333333333333333333333333211234444442 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MEGGDDHHLH HHHHHRPNFP FQLLEKKEDE SASCSSSGAA AFPSLAISSA DNTSQNPSRS 60 TSSSLQISAD PSKKVPPKRT STKDRHTKVD GRGRRIRMPA LCAARVFQLT RELGHKSDGE 120 TIEWLLQQAE PAVIAATGTG TIPANFTSLN ISLRSSGSSM SVPSQLRSSY FSPNFSMPPR 180 RSLFQGIGLS TDNSPSTTTL LNFQSGNINP SGMLQAKQEL RENNTHNTLD LSDAAAAAAA 240 GEESPLARKR RNDQELQHHQ QQNIGNYLLQ SSTGAMPASH ASIPANFWMV QANSSNQVMG 300 GHDPIWTFPN VNNSAAAAAA LYRGSMSSGL HFMNFPTPVA LLPSQQLGTS SIGPTGGSGG 360 GGGNGGLAEA QLGMLSGLNP YRSSGGGVSE SPASGSHSQH HGDDRHDTTS HHS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MEGGDDHHLH HHHHHRPNFP FQLLEKKEDE SASCSSSGAA AFPSLAISSA DNTSQNPSRS  60
TSSSLQISAD PSKKVPPKRT STKDRHTKVD GRGRRIRMPA LCAARVFQLT RELGHKSDGE  120
TIEWLLQQAE PAVIAATGTG TIPANFTSLN ISLRSSGSSM SVPSQLRSSY FSPNFSMPPR  180
RSLFQGIGLS TDNSPSTTTL LNFQSGNINP SGMLQAKQEL RENNTHNTLD LSDAAAAAAA  240
GEESPLARKR RNDQELQHHQ QQNIGNYLLQ SSTGAMPASH ASIPANFWMV QANSSNQVMG  300
GHDPIWTFPN VNNSAAAAAA LYRGSMSSGL HFMNFPTPVA LLPSQQLGTS SIGPTGGSGG  360
GGGNGGLAEA QLGMLSGLNP YRSSGGGVSE SPASGSHSQH HGDDRHDTTS HHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	7e-58	TCP family protein