PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126222.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 789aa MW: 87378 Da PI: 6.9818

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126222.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.6e-07	55	97	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I +++ + q++++++ + XP_027126222.1 55 AWTHQEEESFFSALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 97 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence
MTLKMQTEPQ ISLDCNSCLH PENHVKEGIP GSTISLQDKN ASTLPVKRPT RQWAAWTHQE 60 EESFFSALRQ VGKNFEKITC RVQSKNKDQV RHYYYRLVRR MNKLLGPELC LDAKNSKDTN 120 AAMLRWWSLL EKYSCKASKL HLKPRRFKLF VETLETQLLK DRKKNVRKRA SQGENSSITA 180 PTGLPNQGKV SCHESRVVKD VLIDGQNIPK PGIGKGSSIH RHLNVGINRG NYKSGPSALK 240 TARYQRKAGA TSKAAYKRWE KAAIAGVSLV ADAAEHLERT ATDREVEHVE DAHVQNAFDY 300 CGKDMPSILN NMQSSMKLKL QLFPVDEATR RALEMDKHNP YLELTLSTRK KISSVLEHLN 360 RKWGQSSIAS GELMLLPYFV QQANQVSCPK WAKDSVLSAS DVYAQIGNPP VFRLRYGWFP 420 HADPGSATSL ASLSCPTQHH TETSIVNEQI VDTTPKSSPP TYQEAENLLG IHEGLLSAAK 480 MTTLTPSRLP NHTIGCAGIG PDVNTVKSSN HTAAHVLNRR ESTTDTVVVQ EENLDDLRPH 540 KTVALSAGEW ADSLTNISIG DLLTEASHNG EVNCIDSTEL RNSHCLQQIP FSCDSFDAAI 600 AAHIYKHQSR SALQPPLHTN TSSIWDGEET CDAFVFQKNS VFSEEFQNAS RISPPETSRE 660 ITSTSSAASG KAQESDPEEP LPDDPMHGDI VDKCHADQHS FDDSQRDLNG LTDIYWPDSL 720 GALDLDISSC RYRSDDLILS DSLGGLNRLI ASSLDAFQSC SFFGSDKKES ASAVEAGEIA 780 SDHKISTQV

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence

MTLKMQTEPQ ISLDCNSCLH PENHVKEGIP GSTISLQDKN ASTLPVKRPT RQWAAWTHQE  60
EESFFSALRQ VGKNFEKITC RVQSKNKDQV RHYYYRLVRR MNKLLGPELC LDAKNSKDTN  120
AAMLRWWSLL EKYSCKASKL HLKPRRFKLF VETLETQLLK DRKKNVRKRA SQGENSSITA  180
PTGLPNQGKV SCHESRVVKD VLIDGQNIPK PGIGKGSSIH RHLNVGINRG NYKSGPSALK  240
TARYQRKAGA TSKAAYKRWE KAAIAGVSLV ADAAEHLERT ATDREVEHVE DAHVQNAFDY  300
CGKDMPSILN NMQSSMKLKL QLFPVDEATR RALEMDKHNP YLELTLSTRK KISSVLEHLN  360
RKWGQSSIAS GELMLLPYFV QQANQVSCPK WAKDSVLSAS DVYAQIGNPP VFRLRYGWFP  420
HADPGSATSL ASLSCPTQHH TETSIVNEQI VDTTPKSSPP TYQEAENLLG IHEGLLSAAK  480
MTTLTPSRLP NHTIGCAGIG PDVNTVKSSN HTAAHVLNRR ESTTDTVVVQ EENLDDLRPH  540
KTVALSAGEW ADSLTNISIG DLLTEASHNG EVNCIDSTEL RNSHCLQQIP FSCDSFDAAI  600
AAHIYKHQSR SALQPPLHTN TSSIWDGEET CDAFVFQKNS VFSEEFQNAS RISPPETSRE  660
ITSTSSAASG KAQESDPEEP LPDDPMHGDI VDKCHADQHS FDDSQRDLNG LTDIYWPDSL  720
GALDLDISSC RYRSDDLILS DSLGGLNRLI ASSLDAFQSC SFFGSDKKES ASAVEAGEIA  780
SDHKISTQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	MYB_related family protein