PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027126029.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 370aa    MW: 39992.6 Da    PI: 6.9548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027126029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13113157347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r + + Rt+ q+ s+ qky
   XP_027126029.1 113 PWTEEEHRLFLLGLQKLGKGDWRGISRNFVTSRTPTQVASHAQKY 157
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    
MTRRCSHCSN NGHNSRTCPT RGGGGGSGGC AGGGVKLFGV RLTDGSIMKK SASMGNLSHY  60
HSSSSAAASP NRSSPSSDPF HDPVHLPDGY LSDDPNDASC SANRRAERKK GVPWTEEEHR  120
LFLLGLQKLG KGDWRGISRN FVTSRTPTQV ASHAQKYFIR QSNANRRKRR SSLFDMVPDM  180
STDPLAPPEE QFVLPPQVVD SSKEQLASPH PLAIGDDNEK SLPSLDLSLK QEYEPMEATL  240
SEVVEETEEN VKSPPEIPSL FPSFFPAFIP ISYPLWPSNI APQEEGRGAE ASHHQILKPI  300
PVIPKEPVNV DELVGMSQLS LGGTSSGLVE SSRLSLKLTG EPSRQSAFHA STPIKGSGIT  360
KDENSSFQAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-71MYB_related family protein