PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125750.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 407aa MW: 44756.9 Da PI: 8.8235

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.5e-07	235	257	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H XP_027125750.1 235 HYCQVCGKGFKRDANLRMHMRAH 257 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MIIQGSSNSC FPSGPQGISI YGVSDQDVVS SSSIQAATSA PDTHSSSFLY NLSILKDKVH 60 QVQSLASTFI SSDHNQPPES TPIAVASMGT LIQEIIITAS SMMFACQQVS LGAGGPSGNN 120 NRTSSNELYH HHHSQSHGHG HGHGHHQHRG QGFYANDALD NWYGDSYNTN NCSTTYNNTR 180 TSSVTVSNHN NEVGVGRREL LPQKGEASGE LEKLSPKSYD IVELDAADLL AKYTHYCQVC 240 GKGFKRDANL RMHMRAHGDE YKSTAALSNP LKNNLGANGK DQEGLPKLPR KYSCPXEGCR 300 WNKKHAKFQP LKSMICVKNH YKRSHCPKMY VCKRCSRKQF SVLSDLRTHE KHCGDLKWQC 360 SCGTTFSRKD KLMGHVALFV GHTPAISSLA KMGKADQNAA QMQLDDR

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MIIQGSSNSC FPSGPQGISI YGVSDQDVVS SSSIQAATSA PDTHSSSFLY NLSILKDKVH  60
QVQSLASTFI SSDHNQPPES TPIAVASMGT LIQEIIITAS SMMFACQQVS LGAGGPSGNN  120
NRTSSNELYH HHHSQSHGHG HGHGHHQHRG QGFYANDALD NWYGDSYNTN NCSTTYNNTR  180
TSSVTVSNHN NEVGVGRREL LPQKGEASGE LEKLSPKSYD IVELDAADLL AKYTHYCQVC  240
GKGFKRDANL RMHMRAHGDE YKSTAALSNP LKNNLGANGK DQEGLPKLPR KYSCPXEGCR  300
WNKKHAKFQP LKSMICVKNH YKRSHCPKMY VCKRCSRKQF SVLSDLRTHE KHCGDLKWQC  360
SCGTTFSRKD KLMGHVALFV GHTPAISSLA KMGKADQNAA QMQLDDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	2e-91	C2H2 family protein