PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125743.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 331aa MW: 37503.1 Da PI: 4.5741

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	8.8e-20	96	149	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q+ Le+ Fe ++++ e+++eLAk+lgL+ rq+ vWFqNrRa++k XP_027125743.1 96 KKRRLTADQVLFLEKSFEDENKLEPERKAELAKELGLQPRQIAVWFQNRRARWK 149 56789************************************************9 PP
2	HD-ZIP_I/II	130	9.4e-42	95	186	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+++qv +LE+sFe e+kLeperK+ela+eLglqprq+avWFqnrRAR+ktkqlEkdye+L+++yd+lk++ ++L ke+e+L++e+ XP_027125743.1 95 EKKRRLTADQVLFLEKSFEDENKLEPERKAELAKELGLQPRQIAVWFQNRRARWKTKQLEKDYETLQASYDNLKADYDNLLKEKEQLKAEVV 186 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MAGRTLVYGQ GGAGGASNMS SFLLQNQRVG CSSSSQPHHD SLFISSSSPS FLGSRSMVSF 60 EDVNGRKRSN NSFYHSYDQE ERVDEELEEY FRQPEKKRRL TADQVLFLEK SFEDENKLEP 120 ERKAELAKEL GLQPRQIAVW FQNRRARWKT KQLEKDYETL QASYDNLKAD YDNLLKEKEQ 180 LKAEVVHMTE KLLLKEKENE NSKLSHSSSL SAAPAKGSTA DSACEDEVSK VSAVALKQED 240 LSSAKSDVLD SDSPHYTDGV HSSLLEPGDS SYALEQDQSD LSQDEEDDIT KTLMHPAYLF 300 LKMEDSDYHD PQSSCYYGFP VEDQAFGFWS Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-44	HD-ZIP family protein