PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027125720.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 248aa    MW: 27352.5 Da    PI: 4.6928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027125720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.6e-053988154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +r  + erE+  R+++N+ f  L   l  +     + + Ka++L +A++++k++
  XP_027125720.1 39 KRIHKAEREKMKREHLNDLFLSLANALEVS----EETNGKASVLSEAIRFVKDM 88
                    688899*********************998....67899999*******99975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MSMSSEESPE STLEPVSRAV QTPTTKCQSG RKHQGKVPKR IHKAEREKMK REHLNDLFLS  60
LANALEVSEE TNGKASVLSE AIRFVKDMLA QIESLRSENA ALSSESQYMT MEKEELQDET  120
TSLESQIAEL QNQLRERVGE AELDLNATPE GQFDGSTPHQ VDDCFRFPAL GPAIQQPQNV  180
KPVYVIPLCS DPSVFQQPGN AETASSPLTM VSKPQARYPT PADTWTSQLL EKHPDLGGGD  240
EHCGGRSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.25e-51bHLH family protein