PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125440.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 525aa MW: 58298.2 Da PI: 8.5664

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125440.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.6e-05	66	85	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F+++ L H++ XP_027125440.1 66 VCKECGKCFPSWKALFGHMK 85 6******************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MRSHLINIPA ESNEKHGKKR LPSFKTGNRD DSSKEAQNGY SLRENRKKTS KFAANSSEDT 60 SLDSKVCKEC GKCFPSWKAL FGHMKCHSDK VLSNNSASVE DDSWNSAAAN QKLVMDSQSD 120 NEAAAPIRKQ RSRTIKRYKA TKNINTAPLT IAQPSPCVTE NHEQEQQEEV AMSLIMLSRD 180 ASNWGGLKSV GGGESSDYNS EFLEARSSNQ NKQDCKTESK ILKSSNLDSK MKSKMKQPEP 240 SKASGMSRKE FRVKSSEVST DAFLGDVFIK KNKVEEGAEL QQSKVELPKN QSESESKKQN 300 LSKRRCIALH DDPELSADYS ITKLACGVSD SELLYLGSDR KSKFECTTCN KAFHSYQALG 360 GHRASHKRMK GCLGSKIDSS ENSTETEISP NQTADSKLRI KGYSNDIDTT TDGSKEKVEM 420 TDYGSKEIKT VNTDYGFKKD KSHECPICFK LFPSGQALGG HKRAHLAAEA KSNQGIVIQK 480 QIPEIRDFLD LNLPAPAEEE SSDQVYFSPW WIASNHKPEP LVGML

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MRSHLINIPA ESNEKHGKKR LPSFKTGNRD DSSKEAQNGY SLRENRKKTS KFAANSSEDT  60
SLDSKVCKEC GKCFPSWKAL FGHMKCHSDK VLSNNSASVE DDSWNSAAAN QKLVMDSQSD  120
NEAAAPIRKQ RSRTIKRYKA TKNINTAPLT IAQPSPCVTE NHEQEQQEEV AMSLIMLSRD  180
ASNWGGLKSV GGGESSDYNS EFLEARSSNQ NKQDCKTESK ILKSSNLDSK MKSKMKQPEP  240
SKASGMSRKE FRVKSSEVST DAFLGDVFIK KNKVEEGAEL QQSKVELPKN QSESESKKQN  300
LSKRRCIALH DDPELSADYS ITKLACGVSD SELLYLGSDR KSKFECTTCN KAFHSYQALG  360
GHRASHKRMK GCLGSKIDSS ENSTETEISP NQTADSKLRI KGYSNDIDTT TDGSKEKVEM  420
TDYGSKEIKT VNTDYGFKKD KSHECPICFK LFPSGQALGG HKRAHLAAEA KSNQGIVIQK  480
QIPEIRDFLD LNLPAPAEEE SSDQVYFSPW WIASNHKPEP LVGML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	8e-26	C2H2 family protein