PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125439.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 552aa MW: 61347.6 Da PI: 8.3334

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.1e-05	93	112	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F+++ L H++ XP_027125439.1 93 VCKECGKCFPSWKALFGHMK 112 6******************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MEEDQEVKHV CKFCDKSFPC GRSLGGHMRS HLINIPAESN EKHGKKRLPS FKTGNRDDSS 60 KEAQNGYSLR ENRKKTSKFA ANSSEDTSLD SKVCKECGKC FPSWKALFGH MKCHSDKVLS 120 NNSASVEDDS WNSAAANQKL VMDSQSDNEA AAPIRKQRSR TIKRYKATKN INTAPLTIAQ 180 PSPCVTENHE QEQQEEVAMS LIMLSRDASN WGGLKSVGGG ESSDYNSEFL EARSSNQNKQ 240 DCKTESKILK SSNLDSKMKS KMKQPEPSKA SGMSRKEFRV KSSEVSTDAF LGDVFIKKNK 300 VEEGAELQQS KVELPKNQSE SESKKQNLSK RRCIALHDDP ELSADYSITK LACGVSDSEL 360 LYLGSDRKSK FECTTCNKAF HSYQALGGHR ASHKRMKGCL GSKIDSSENS TETEISPNQT 420 ADSKLRIKGY SNDIDTTTDG SKEKVEMTDY GSKEIKTVNT DYGFKKDKSH ECPICFKLFP 480 SGQALGGHKR AHLAAEAKSN QGIVIQKQIP EIRDFLDLNL PAPAEEESSD QVYFSPWWIA 540 SNHKPEPLVG ML

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MEEDQEVKHV CKFCDKSFPC GRSLGGHMRS HLINIPAESN EKHGKKRLPS FKTGNRDDSS  60
KEAQNGYSLR ENRKKTSKFA ANSSEDTSLD SKVCKECGKC FPSWKALFGH MKCHSDKVLS  120
NNSASVEDDS WNSAAANQKL VMDSQSDNEA AAPIRKQRSR TIKRYKATKN INTAPLTIAQ  180
PSPCVTENHE QEQQEEVAMS LIMLSRDASN WGGLKSVGGG ESSDYNSEFL EARSSNQNKQ  240
DCKTESKILK SSNLDSKMKS KMKQPEPSKA SGMSRKEFRV KSSEVSTDAF LGDVFIKKNK  300
VEEGAELQQS KVELPKNQSE SESKKQNLSK RRCIALHDDP ELSADYSITK LACGVSDSEL  360
LYLGSDRKSK FECTTCNKAF HSYQALGGHR ASHKRMKGCL GSKIDSSENS TETEISPNQT  420
ADSKLRIKGY SNDIDTTTDG SKEKVEMTDY GSKEIKTVNT DYGFKKDKSH ECPICFKLFP  480
SGQALGGHKR AHLAAEAKSN QGIVIQKQIP EIRDFLDLNL PAPAEEESSD QVYFSPWWIA  540
SNHKPEPLVG ML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	6e-34	C2H2 family protein