PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027125428.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 181aa    MW: 20341.7 Da    PI: 10.4384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027125428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-091665654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    + +Er+RR r+N  ++eL +l+P+  + ++++ ls  +   ++  YI +L
  XP_027125428.1 16 KTVERNRRIRMNGLIHELTSLVPPqHFVPSKEQLSQRDQIDQVAAYIMQL 65
                    679*********************888888888**************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MENCSVNGAS GKLDRKTVER NRRIRMNGLI HELTSLVPPQ HFVPSKEQLS QRDQIDQVAA  60
YIMQLKDRVE KLRKTKELVK RKIKTKDSNT GNSAIPGSRI PVVKIREIGS SLEVVLVTGL  120
GKNFGLHEVI IVVEEQGVEV VSISISTMDN RICHILHAQV KVSRLGVDTL TIYDRLQKLI  180
N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-16bHLH family protein