PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027125293.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 288aa MW: 32128 Da PI: 8.2789

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027125293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll d++k +G g W++ +++ g++R++k+c++rw++yl XP_027125293.1 14 RGAWTPSEDRLLTDYIKSHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.6	2.2e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_027125293.1 67 RGNITDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7999****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MGRSPCCAKE GLNRGAWTPS EDRLLTDYIK SHGEGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLAKKYQSGE 120 RLAASSSCTK RNPSSTTLLH KLTSSAHQPP NSEKREGSST YVVRTKARRC TKVFFNADLQ 180 TPSAQQPGVL AVKSPVPSGA DQAKDDSNET RTTDNSEKVG PVPASGGVTE SPPTFSGEEG 240 CSSGFMMDFE MDNDFLSDFL NMEFERDFPE VVAQDLLDTA VTWLHEVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-64	MYB family protein