PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027125291.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 35832.8 Da PI: 6.8513 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll d++k +G g W++ +++ g++R++k+c++rw++yl XP_027125291.1 14 RGAWTPSEDRLLTDYIKSHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.6e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_027125291.1 67 RGNITDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7999******************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 322 aa Download sequence |
MGRSPCCAKE GLNRGAWTPS EDRLLTDYIK SHGEGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLAKKYQSGE 120 RLAASSSCTK RNPSSTTLLH KLTSSAHQPP NSEKREGSST YVVRTKARRC TKVFFNADLQ 180 TPSAQQPGVL AVKSPVPSGA DQAKDDSNET RTTDNSEKVG PVPASGGVTE SPPTFSGEEG 240 CSSGFMMDFE MDNDFLSDFL NMEFERDFPE VVAQGTDNNE ANDFSFNCCP RALSHDDRND 300 HADLGSITDL LDTAVTWLHE VQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-64 | MYB family protein |