PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027125258.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 87aa    MW: 9727.91 Da    PI: 9.5678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027125258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-0714531454
                    HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    d+iN+ + +L+ llP++ + +++++  + +L++++++I+ L
  XP_027125258.1 14 DEINNLILKLQALLPHS-GSRNRRVQASKVLQETCNHIRRL 53
                    68**************7.68*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    
MSSRRSRGSG STEDEINNLI LKLQALLPHS GSRNRRVQAS KVLQETCNHI RRLTRDADDL  60
SERLSQLLAS NDINSLDIES IKSILGQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.15e-20bHLH family protein