PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124781.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 291aa    MW: 32669.8 Da    PI: 6.6268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08171218455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L++++P +    +k +  a +L + ++Y++sLq
  XP_027124781.1 171 SHSLAERVRRGKINERLRCLQDIVPGC----HKTMGMAVMLDEIINYVQSLQ 218
                     8*************************9....788*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MAQHFISDVQ NIRQSFSLSD VDPNMEMMSQ FPELNPGALD SSNFTNVQPS MGFSFHESNI  60
SQLLDQFPGN LAENFPGIFP SDFKNVLSLP DPICSSAYDH TLHEGKKRKL TDTPESSSAN  120
SSAQISENGS RTKNCSQITG KGKRIRSNRK DEEKPKEVVH VRAKRGQATD SHSLAERVRR  180
GKINERLRCL QDIVPGCHKT MGMAVMLDEI INYVQSLQNQ VEFLSMKLTA ASNFYDFNRE  240
TDTIDTLQRA KAFEAMKMQK LMKEDFDGVP STQLGPLDQT FGCYPSLPFN T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.18e-61bHLH family protein