PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124568.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 372aa    MW: 40601.4 Da    PI: 6.225
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-17257291135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_027124568.1 257 CLHCGSEKTPQWRTGPMGPKTLCNACGVRYKSGRL 291
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MEASSEFFVG GYFSHAGDNE FDHKSMENQN ITGNSNNFTV DDLLDFPKED EVMTDAFFDS  60
ITGNSGESSS LTVVDSCNSS VSGGDRQFNG NISCRSFTDT QFSGTELCVP YDDLAELEWL  120
SNFVEESFSS DDLHNLHLIS PTTNFTAPSA SSAATANATT DTSSSATTIS TNNDNSNSSS  180
PVFPSDVSFP GKARSKRSRA APCNWASRLV LLASPATSSS EPTNDVNTPN PISVTIKAPK  240
PAPSRKRETT ETPGRQCLHC GSEKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS  300
PTFVSAKHSN SHRKVLELRR QKELQRQQQQ QQQLLSQASI FGVSNGGDEY LIHHHHHHPH  360
QQNVGPDHRL MI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-60GATA family protein