PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027124133.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 181aa    MW: 20752.1 Da    PI: 10.6344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027124133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.3e-101565554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     + +Er+RR r++  ++eL +l+P+  +k++++ l+  +   ++v YI +L
  XP_027124133.1 15 RKTIERNRRIRMKGLISELASLVPPqHFKPSKEMLNQKDQIDQVVTYIMQL 65
                    678**********************777766666**************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MENNCSNDAP RKLDRKTIER NRRIRMKGLI SELASLVPPQ HFKPSKEMLN QKDQIDQVVT  60
YIMQLKERVE KLNKRKEISK SEHQTKGTNP RNSAIPSSRI PVLKIRESDS SLEVVLVTGL  120
RKNFALHEVI QVLHGQGLEV VSVSISTIEE KIYHIVHAQV RVPRLGADTL TIYGRLQKLF  180
N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-22bHLH family protein