PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027124068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 184aa MW: 21591.4 Da PI: 10.3625 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.7 | 9.6e-19 | 6 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiy..kvePwdLpk.............kvkaeekewyfFskrdkkyatgkrknratk 79 +ppGfrF+P+d el+ +yLk k++g + + ++vi e ++y ++ Pw L + +v + +e ++ ++ + ++++ r++ XP_027124068.1 6 MPPGFRFSPSDTELL-YYLKMKAKGMSfRPWNDVILEKNLYaeNAAPWMLFNnddpwqvtskvdaAVGKIYEEKVLYVVTKLVKIGSNKTMRSVG 99 79*************.***********5455677888887722457999953467777766555422222224445555556666678999999* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++W + + +v +++g+++g kk+L + r+ + ++W+mh y++ XP_027124068.1 100 PSTWDSATGKYKVWNSQGQVMGFKKILNLR--RKGMEVMSNWMMHAYHI 146 ****955555677777*************8..5666689********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MKKFRMPPGF RFSPSDTELL YYLKMKAKGM SFRPWNDVIL EKNLYAENAA PWMLFNNDDP 60 WQVTSKVDAA VGKIYEEKVL YVVTKLVKIG SNKTMRSVGP STWDSATGKY KVWNSQGQVM 120 GFKKILNLRR KGMEVMSNWM MHAYHISGVL LQEVKDNDYV ICRIKWDYSR NIWVLIKKFK 180 KVVD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71930.1 | 6e-12 | NAC family protein |