PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027124064.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 521aa MW: 58525 Da PI: 6.821

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027124064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	91	110	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 C++Cgk F+++ +L H+r XP_027124064.1 91 ICSICGKDFPSRKSLFGHMR 110 5******************8 PP
2	zf-C2H2	13	0.00031	374	396	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs++ L H ++H XP_027124064.1 374 FRCSTCDKTFSSHQALGGHRSSH 396 89**************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MEENKNSNLG KEKQSRLVEE EKNHHESKTN PVSMDGKLLV KLKFPKGAEE TEEGLSAHVQ 60 ARENLKKLKF NKSVKFKRDG SSSDAAARET ICSICGKDFP SRKSLFGHMR CHPDREWRGM 120 EPPKEQGKIP REHPQSLSIL DDDDDEEEEA EEEESLETII RLIIIWSVKG KRGRECPRVL 180 LDTYPYCEEE EQKIQDAVDQ LISLAYKQNK HDGSSTRRGQ IKEGRNSASG LKKKRVDDPV 240 HPARVRTDYP VKKRRFSEID TDSEETVDGL SDKGKRKDPM KPESSVEISP SSQSRHTVIG 300 KISGRSNHFS AHELDKMELE KQNHCFYDDC KKGNVGVKNK RRGPKTTPKN SETEVELTPL 360 DQKLDGEEST PEKFRCSTCD KTFSSHQALG GHRSSHNKFK ATVQNTADGS SPFPFGHENR 420 ANLVSQTAVE NDEIKGVEAS KFAENIHECT LCKKTFPSGQ ALGGHKRCHW QSLSSQVASP 480 EAEEPRPLVR KGLQFDLNEP AEEEDANASD LGNSSGYASC S

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MEENKNSNLG KEKQSRLVEE EKNHHESKTN PVSMDGKLLV KLKFPKGAEE TEEGLSAHVQ  60
ARENLKKLKF NKSVKFKRDG SSSDAAARET ICSICGKDFP SRKSLFGHMR CHPDREWRGM  120
EPPKEQGKIP REHPQSLSIL DDDDDEEEEA EEEESLETII RLIIIWSVKG KRGRECPRVL  180
LDTYPYCEEE EQKIQDAVDQ LISLAYKQNK HDGSSTRRGQ IKEGRNSASG LKKKRVDDPV  240
HPARVRTDYP VKKRRFSEID TDSEETVDGL SDKGKRKDPM KPESSVEISP SSQSRHTVIG  300
KISGRSNHFS AHELDKMELE KQNHCFYDDC KKGNVGVKNK RRGPKTTPKN SETEVELTPL  360
DQKLDGEEST PEKFRCSTCD KTFSSHQALG GHRSSHNKFK ATVQNTADGS SPFPFGHENR  420
ANLVSQTAVE NDEIKGVEAS KFAENIHECT LCKKTFPSGQ ALGGHKRCHW QSLSSQVASP  480
EAEEPRPLVR KGLQFDLNEP AEEEDANASD LGNSSGYASC S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	255	KKKRVDDPVHPARVRTDYPVKKRR
2	233	256	KKKRVDDPVHPARVRTDYPVKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	3e-19	C2H2 family protein