PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123950.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 405aa MW: 45601.9 Da PI: 8.5432

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.7e-09	204	251	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq XP_027123950.1 204 SHSLAERVRREKISERMKILQALVPGC----DKVTGKALMLDEIINYVQSLQ 251 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MATFSYQHQQ QPLHLESSSG LFLQSSSQMR MSAGLLEEPN MTRMTTTTTS FPQFYRPDHF 60 LHQEIPSKSY VNESTCSIFD QSCTKVTHFS NNGPSLTNKT STDSSSVTDK LESGEQVTQK 120 VHAAAMDKKR KTKKGPLPVN SAQSKAIGDQ LAKGKKQRKC GRIMKEVEDK KSNEDKKVPE 180 KAAEEAPPTG YIHVRARRGQ ATDSHSLAER VRREKISERM KILQALVPGC DKVTGKALML 240 DEIINYVQSL QNQVEVKLLI DLLFGKVFEA CCYIIHAKYF KFLQFLSMKL ASLNPMFYDF 300 GMDLDPYIAR PEPTLSNMAS PVQNMQQCDP MQAPIISATN NSLRTDTAND YPQLDSSASA 360 LLIQQSHHIP QILSQENGQL LWDVDDRRQK LINQTGFNNN LCSFH

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MATFSYQHQQ QPLHLESSSG LFLQSSSQMR MSAGLLEEPN MTRMTTTTTS FPQFYRPDHF  60
LHQEIPSKSY VNESTCSIFD QSCTKVTHFS NNGPSLTNKT STDSSSVTDK LESGEQVTQK  120
VHAAAMDKKR KTKKGPLPVN SAQSKAIGDQ LAKGKKQRKC GRIMKEVEDK KSNEDKKVPE  180
KAAEEAPPTG YIHVRARRGQ ATDSHSLAER VRREKISERM KILQALVPGC DKVTGKALML  240
DEIINYVQSL QNQVEVKLLI DLLFGKVFEA CCYIIHAKYF KFLQFLSMKL ASLNPMFYDF  300
GMDLDPYIAR PEPTLSNMAS PVQNMQQCDP MQAPIISATN NSLRTDTAND YPQLDSSASA  360
LLIQQSHHIP QILSQENGQL LWDVDDRRQK LINQTGFNNN LCSFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	155	KKRKTKKGPLPVNSAQSKAIGDQLAKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-52	bHLH family protein