PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027123818.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 298aa MW: 33239 Da PI: 5.9245

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027123818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.7	1.6e-37	10	111	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rr+C++dC+lapyfpa+qpk f+n+hklFG+sn+lk+l++l +++++ am+s++y++++r + Pv+G++g+i++l q++ +++el XP_027123818.1 10 ACAACKYQRRRCTADCPLAPYFPADQPKMFQNAHKLFGVSNILKILRQLdHPSQKLVAMKSIIYQSNIRDKYPVHGCLGIIQQLWYQIQLAEEEL 104 7**********************************************777889************************************** PP DUF260 95 allkeel 101 ++++++l XP_027123818.1 105 QAIHAQL 111 *999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MTLKGGTSQA CAACKYQRRR CTADCPLAPY FPADQPKMFQ NAHKLFGVSN ILKILRQLDH 60 PSQKLVAMKS IIYQSNIRDK YPVHGCLGII QQLWYQIQLA EEELQAIHAQ LALYRQHQQQ 120 EVSTGLSDSI SQLHLGMAPP SNALSHFHQD APQNYDNTVS ALPIGSHPTY SSNSANAANY 180 NATYMDSKEN NAVNSLWVQQ PPYNNSSSDI NNSNPMVMQS QLINSQPLII QQDCGTQDYD 240 EMHPFFDTID DRQSYIASKE AYESSSESSL KDTTQSVEHV AENELKSAAA CFSLTSIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-56	LBD family protein