PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122331.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 321aa    MW: 36438.2 Da    PI: 5.9505
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK856.7e-27150200252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     +k++s +++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl
  XP_027122331.1 150 SKNLSRKTISNYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 200
                     699*********************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGTQPFQSWS KFQVMTKEED VYPFSFPTQL SPLEFSTYNP GCAGSGSQLD FPFRDPDFDA  60
FPIMGSCLND PSYASLDIDP SHYVFQADSW QGFHGSGFRL GNEKSPEFDI QNQQLLLAGS  120
NEQLTSQEEV VVEEKGMKKA REEKGGTISS KNLSRKTISN YFYMPITQAA KELNVGLTLL  180
KKRCRELGIR RWPHRKLMSL QTLIKNVQEL AKEGGEGAER KFREAIDILE HEKKMLEEIP  240
HLQLEDNTKR LRQACFKANY KKRKLMGMVK ESPSHSGVNP HEVNALAIPD FGSRVDDDQQ  300
EEELKILFSD CFPSPNTLIS G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-54Nin-like family protein