PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122285.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 377aa    MW: 43376.9 Da    PI: 8.7967
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122285.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.52.8e-102166147
            FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
                    +fYn+Y+  vGFsvrk++ +k  ++  +t+r+++C keg + +++++
  XP_027122285.1 21 NFYNRYGLVVGFSVRKDYLNKD-KDSVVTSRRYTCCKEGISLKQSHE 66
                    6******************999.6777************99888876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MEEALCPKIG IEFQSEDKAY NFYNRYGLVV GFSVRKDYLN KDKDSVVTSR RYTCCKEGIS  60
LKQSHELMGK EAGGLGNIDY THDDLKRYLR TKRERGLKYD ETGAMLRYFE EQKLENPSFF  120
HAEQLDCEEQ ITNIFWADAS MLMDYTYFGD VVTFDTTYKT NKEYRPLGVF VGFNQFRQLV  180
IFGATLLYDE TIESFKWCSK GILCSHALKV YDMVGTKFIP DQYVTKRWTK KARSGGSVDC  240
KGREISSDLS LSISHRYRLL APEIVRLATR AAMSEAATKL VGSVMSELSK RVEILFCGEI  300
DEITQNSASM DLCKEIQVQN AAGHFVTPTG LKKRSGKKTK KVLCSWVDRF HRQRRTLDCL  360
RQALLRWLVL NLIFGLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.18e-31FAR1 family protein