PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027122156.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 174aa    MW: 19749.2 Da    PI: 10.3998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027122156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.2e-101664654
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +  Er+RR r++s++ eL +l+P+++++++++ls  + L +++ YI +L
  XP_027122156.1 16 KTTERNRRIRMKSSILELISLVPQQFNPSKERLSPKDQLHRVTAYITQL 64
                    568*********************99999999***************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MESYNASDAT TKLDRKTTER NRRIRMKSSI LELISLVPQQ FNPSKERLSP KDQLHRVTAY  60
ITQLRERVEK LKKMKEMLIN KFNTSGIPGS GIPVVKITEI GSNLEVVLVT GLSKKFGLHE  120
VILVLHGQGV EVVSISISTM ADRIYHILHA QVKMPRIGVD TLIIYDRLQK LCLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-21bHLH family protein