PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027121342.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 274aa    MW: 29876.7 Da    PI: 6.9137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027121342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.1e-11160207455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  XP_027121342.1 160 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 207
                     8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MDPPIVSHSS FSPAHASSSY TLTDLWPFPI GPPAVLGLPM PPALPPPHGT PPPVAALSLE  60
ESTVTDLSAC RTNATNKRKH VLSQHHLLAS ASCAVHSNNA NVKRMKASEG GIGEQIDESK  120
AEPQTSSYTT NKPADHDDTN PQPPKDYIHV RARRGQATDS HSLAERARRE KISERMKILQ  180
DLVPGCNKVI GKALVLDEII NYIQSLQRQV EFLSMKLEAV NSRMNSAIEG FPSKELAAPQ  240
FDATAMIFGQ QAPREYAPDE WLHIQVGSSL ERAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.15e-69bHLH family protein