PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027120841.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 474aa    MW: 52879.4 Da    PI: 6.9617
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027120841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.82.2e-831054734374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svse.lykalppsetseknsseelaalklfsev...sPilkf 93 
                     lL ++A  +s++++  a++lL+  +  as +g+p+qR++ yf+eAL+++++  ++ e l ++l+ ++ + + ++  l+ + ++ e+    P+ ++
  XP_027120841.1 105 LLQAAAFNFSNQQFVHARNLLNICQGSASLSGNPIQRVVYYFVEALQEKITMeTGGEvLQEKLEGNQRDLTIEEAFLSLHPALMEChakLPFCRI 199
                     344555567888888***********************************9943333033344444443333444555555566653337***** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +++ta qaIl+ v +++r+H iD++i+ G+QW  L+qaLa+R e p   l+iT+vg+    ske++ee+g++L++fA++l++pf f++ v+++l+
  XP_027120841.1 200 TQFTAIQAILDNVGSAKRIHLIDLGIKCGTQWSVLMQALANRHECPLeLLKITAVGP----SKEMIEEIGKQLSSFAASLNIPFAFRI-VVSDLQ 289
                     *******************************************6665499*******....**************************9.7999** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +++   +++  +E++a+ + l++ +ll+ +++les    +L+++k+l+P+v+v++e ea++n++ F++rf  +l++ +alfd+le+ + r+s+ r
  XP_027120841.1 290 NVDQYLFQLAANEVVAIYSELRMASLLAWPHHLES----LLSTIKKLRPRVMVMIEIEANTNAPLFMDRFNASLSVSAALFDCLESCMDRDSSCR 380
                     ***************************99999999....******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + +E ++l++ i+ +++ +g+e+++r+e+ + Wr+ l+++G+ +++ls+ a +qa+l+ +  + +   ++e + + +++gWk+ p+ ++S+W+
  XP_027120841.1 381 AIIEGMFLREGIQYLITSRGKESIHRQESIGFWRAFLKRFGMVEITLSNWAFCQANLVAKSNPcWSSCTLEVNGKGMTIGWKGTPIHMLSVWK 473
                     ***************************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    
MEPQHEEITK GAQTTVPISF LAEAKNKNQL LPAASLHLIK KHHESKVMPE QSPTSEPSSI  60
SCPLSLELST VDIIKMARKI GSGDLSYVKS AVSPENYKDF ELALLLQAAA FNFSNQQFVH  120
ARNLLNICQG SASLSGNPIQ RVVYYFVEAL QEKITMETGG EVLQEKLEGN QRDLTIEEAF  180
LSLHPALMEC HAKLPFCRIT QFTAIQAILD NVGSAKRIHL IDLGIKCGTQ WSVLMQALAN  240
RHECPLELLK ITAVGPSKEM IEEIGKQLSS FAASLNIPFA FRIVVSDLQN VDQYLFQLAA  300
NEVVAIYSEL RMASLLAWPH HLESLLSTIK KLRPRVMVMI EIEANTNAPL FMDRFNASLS  360
VSAALFDCLE SCMDRDSSCR AIIEGMFLRE GIQYLITSRG KESIHRQESI GFWRAFLKRF  420
GMVEITLSNW AFCQANLVAK SNPCWSSCTL EVNGKGMTIG WKGTPIHMLS VWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-47GRAS family protein