PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027119910.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 751aa MW: 85359.3 Da PI: 6.6644

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027119910.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.5	7.1e-21	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak+ GFs+r+++++ + + +t+r+f C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel XP_027119910.1 59 EFYCSFAKQYGFSIRRHRTRGKdGVGRGVTRRDFACHRGGFPQLKPSEDGKLQRNRKSSRCGCQAYMRIVKRMdfdVPEWRITGFNNVHNHELL 152 6*************9998874556679***************9**************987776577789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence
MPDIVSIVKE NSENGTDSSQ DDVGAIEEMP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQYGF SIRRHRTRGK DGVGRGVTRR DFACHRGGFP QLKPSEDGKL QRNRKSSRCG 120 CQAYMRIVKR MDFDVPEWRI TGFNNVHNHE LLKSNEVQLL PAYCMISADD KSRICMFAKA 180 GMSVRQMLRL MELEKGVKIG CLPFTEIDVR NLLQSIRNVD HDNDPIDLLK LCKEKKDKDP 240 NFKYNFKIDA SNRLENIAWS YASCIRLYDA FGDVLVFDTT HRLDAYDMLL GIWIGVDNHG 300 KTCLFGCALL RDENMQSFSW ALKTFLSFMN GKAPGTILTD QNMWLKEALA AEMPRTKHAF 360 CIWHIISKFS DWFSTLLASQ YDKWKSEFLR LYNLHSVDEF EVGWRQMMDS YGLHGNKHAV 420 SLYALRMFWA LPYLRTYFFA GMTNTIHSES INSYIQRFLS AQSAVDNFVE QVGAVVDAKD 480 QPGGKQKMQQ KVQKGLLITG SPIELHAANI LTPYAFNKLQ EELVLAPQYA SLMVDESYFI 540 VRHHTEMDGG CKVLWAPHDE FISCSCHHFE FTGILCRHVL RVLSTNNCFH IPDQYLPLRW 600 REVLSASSKA PSSSSGDHPG KLHLFQSLIS TLIAESIETD ERLDAACEQV DFILARIKEL 660 PGPSSGTKEI PCDSPSDSLI LPEVEDSDCV AQSSAYESMI KLKERRSRDG LDFYSKRRRC 720 SFSCCGHFGH DANDCPLMGS DDLNGDGLGF L

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence

MPDIVSIVKE NSENGTDSSQ DDVGAIEEMP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQYGF SIRRHRTRGK DGVGRGVTRR DFACHRGGFP QLKPSEDGKL QRNRKSSRCG  120
CQAYMRIVKR MDFDVPEWRI TGFNNVHNHE LLKSNEVQLL PAYCMISADD KSRICMFAKA  180
GMSVRQMLRL MELEKGVKIG CLPFTEIDVR NLLQSIRNVD HDNDPIDLLK LCKEKKDKDP  240
NFKYNFKIDA SNRLENIAWS YASCIRLYDA FGDVLVFDTT HRLDAYDMLL GIWIGVDNHG  300
KTCLFGCALL RDENMQSFSW ALKTFLSFMN GKAPGTILTD QNMWLKEALA AEMPRTKHAF  360
CIWHIISKFS DWFSTLLASQ YDKWKSEFLR LYNLHSVDEF EVGWRQMMDS YGLHGNKHAV  420
SLYALRMFWA LPYLRTYFFA GMTNTIHSES INSYIQRFLS AQSAVDNFVE QVGAVVDAKD  480
QPGGKQKMQQ KVQKGLLITG SPIELHAANI LTPYAFNKLQ EELVLAPQYA SLMVDESYFI  540
VRHHTEMDGG CKVLWAPHDE FISCSCHHFE FTGILCRHVL RVLSTNNCFH IPDQYLPLRW  600
REVLSASSKA PSSSSGDHPG KLHLFQSLIS TLIAESIETD ERLDAACEQV DFILARIKEL  660
PGPSSGTKEI PCDSPSDSLI LPEVEDSDCV AQSSAYESMI KLKERRSRDG LDFYSKRRRC  720
SFSCCGHFGH DANDCPLMGS DDLNGDGLGF L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein