PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027119798.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 390aa MW: 42719.1 Da PI: 4.6257

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027119798.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l++++kq G g+W++ ++ g+ R++k+c++rw +yl XP_027119798.1 14 RGRWTAEEDEKLINYIKQNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	53	8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e ++++++ G++ W++Ia++++ gRt++++k++w+++l XP_027119798.1 67 RGNFTREEEETIINLHRSVGNK-WSLIASKLP-GRTDNEVKNYWNSHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MGRAPCCEKV GLRRGRWTAE EDEKLINYIK QNGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNF TREEEETIIN LHRSVGNKWS LIASKLPGRT DNEVKNYWNS HLSRKIYSFR 120 SSDGSSVTTL DMVNMPSKSK RKGGRVSRAV AKKYSMHPIT KAPPITTTTN ETSSSSKISS 180 TSGIQEATTA AQNALVGMVE ATTHGVPEST AAAEKVSDDA AVGAVEESGK YQLQPMANNN 240 YDYDESEGGC INSMHDIRCG DGGEGCARAL LVPSPEKLEG EKGVAGPNDE LDDVTLLLES 300 VLESDLMDLS EISVHTGDTE NESMYPESAS INKDSDSGAS NSNSDTGDGL YDCFAPLDSY 360 FNHTWDAEYA VPGFGLWDQE DDDVLWPWES

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MGRAPCCEKV GLRRGRWTAE EDEKLINYIK QNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNF TREEEETIIN LHRSVGNKWS LIASKLPGRT DNEVKNYWNS HLSRKIYSFR  120
SSDGSSVTTL DMVNMPSKSK RKGGRVSRAV AKKYSMHPIT KAPPITTTTN ETSSSSKISS  180
TSGIQEATTA AQNALVGMVE ATTHGVPEST AAAEKVSDDA AVGAVEESGK YQLQPMANNN  240
YDYDESEGGC INSMHDIRCG DGGEGCARAL LVPSPEKLEG EKGVAGPNDE LDDVTLLLES  300
VLESDLMDLS EISVHTGDTE NESMYPESAS INKDSDSGAS NSNSDTGDGL YDCFAPLDSY  360
FNHTWDAEYA VPGFGLWDQE DDDVLWPWES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	2e-71	MYB family protein