PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027119680.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 1001aa MW: 109944 Da PI: 5.0928

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027119680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.3	3.2e-28	597	648	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF +++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ XP_027119680.1 597 AEKHVSLSVLQQYFCGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 648 5899**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence
MEYPYPSTEK GGFWASPRAQ KDGNASFDGS TRTWNLEDSF QELMNFDAYA GWCNSPSSAD 60 QFFGPFGLSP MSSSYVPLDG MNFGEQSIEG FRVADGETGG SSSGGEDKMI RQDLENRFHV 120 PMDTASEGVD LTGRNDKSCR QHDDDVVNTV NSLISRPPSQ TLPEKMLKAL SLFKESAGGG 180 ILAQVWIPIR DGNRYILSTC EQPYLLDQAL SGYREVSRAF TFSVEVKPGS FLGLPGRVFA 240 SRVPEWTSNV MYYKEAEYLR VQHALDHEVC GSIAFPVFED DSFDLSCCAV LELVTIKEQP 300 HFDLEMDSVC RALQAVNLRS AAPPRLYPQC LSKNQRVALA EITDVLRAVC HAHRLPLALT 360 WIPCSYTEAV DEPVKLRIGG SAASSNENSI LCIEDTACYV NDRSMEGFVH VCMEHYLEEG 420 QGIAGKALQS NHPFFFPDVK DYHISEYPLV HHARKFNLNA AVAIRLRSTY TGDDDYILEF 480 FLPVNMRGSS EQQLLLNNLS STMQRICRSL RTVSDAELIG GDDIKVELPN RSVNNLPTTA 540 LPRNCSQQSL LNSNSSSSDH LFSGTSETKS SHKGDTASGE QAMAGPKRQS EKKRSTAEKH 600 VSLSVLQQYF CGSLKDAAKS IGVCPTTLKR ICRQHGILRW PSRKINKVNR SLKKIQSVLD 660 SVQGVEGGLK FDPATGGLLA GGSVIQDFDT RKGMLCPVKS ASLRNPDSLT QDTTSACQTY 720 CMDGENSVVK MEECDMDAIE VQNANMLSPN SRKEASKLQS STVVCCNDGK LAALDAGQSQ 780 PASPWPYSGN ASLDSYLKKS SDKEWCLNGD RQKLGKSDHQ LVSLSSSSLV VVDEIEAKMK 840 SDNGLDGDDG GLEYNQPTSS SMTDSSNGSG SMMNGSSSSS RNFGEQKHSK NESNFGDSSS 900 KLTAKATYKD DTIRFKFDPS AGCLQLYEEI SKRFKLQLGV FQLKYMDDEE EWVMLVSDAD 960 LQECLEILDF LGTRTIKFLV RDTPQTVGSS GSSNCYLTGG S

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence

MEYPYPSTEK GGFWASPRAQ KDGNASFDGS TRTWNLEDSF QELMNFDAYA GWCNSPSSAD  60
QFFGPFGLSP MSSSYVPLDG MNFGEQSIEG FRVADGETGG SSSGGEDKMI RQDLENRFHV  120
PMDTASEGVD LTGRNDKSCR QHDDDVVNTV NSLISRPPSQ TLPEKMLKAL SLFKESAGGG  180
ILAQVWIPIR DGNRYILSTC EQPYLLDQAL SGYREVSRAF TFSVEVKPGS FLGLPGRVFA  240
SRVPEWTSNV MYYKEAEYLR VQHALDHEVC GSIAFPVFED DSFDLSCCAV LELVTIKEQP  300
HFDLEMDSVC RALQAVNLRS AAPPRLYPQC LSKNQRVALA EITDVLRAVC HAHRLPLALT  360
WIPCSYTEAV DEPVKLRIGG SAASSNENSI LCIEDTACYV NDRSMEGFVH VCMEHYLEEG  420
QGIAGKALQS NHPFFFPDVK DYHISEYPLV HHARKFNLNA AVAIRLRSTY TGDDDYILEF  480
FLPVNMRGSS EQQLLLNNLS STMQRICRSL RTVSDAELIG GDDIKVELPN RSVNNLPTTA  540
LPRNCSQQSL LNSNSSSSDH LFSGTSETKS SHKGDTASGE QAMAGPKRQS EKKRSTAEKH  600
VSLSVLQQYF CGSLKDAAKS IGVCPTTLKR ICRQHGILRW PSRKINKVNR SLKKIQSVLD  660
SVQGVEGGLK FDPATGGLLA GGSVIQDFDT RKGMLCPVKS ASLRNPDSLT QDTTSACQTY  720
CMDGENSVVK MEECDMDAIE VQNANMLSPN SRKEASKLQS STVVCCNDGK LAALDAGQSQ  780
PASPWPYSGN ASLDSYLKKS SDKEWCLNGD RQKLGKSDHQ LVSLSSSSLV VVDEIEAKMK  840
SDNGLDGDDG GLEYNQPTSS SMTDSSNGSG SMMNGSSSSS RNFGEQKHSK NESNFGDSSS  900
KLTAKATYKD DTIRFKFDPS AGCLQLYEEI SKRFKLQLGV FQLKYMDDEE EWVMLVSDAD  960
LQECLEILDF LGTRTIKFLV RDTPQTVGSS GSSNCYLTGG S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein