PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027119487.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 198aa    MW: 22039.6 Da    PI: 8.7516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027119487.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.1e-11249454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   ++e+Ik+L
  XP_027119487.1  2 SHIAVERNRRRQMNEHLKVLRSLTPCF---YIKRGDQASIIGGVIEFIKEL 49
                    89************************9...9******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MSHIAVERNR RRQMNEHLKV LRSLTPCFYI KRGDQASIIG GVIEFIKELH QVLQSLEAKK  60
RRMSLSPSPG PPGPSPRPVL LQLSPNSESS LGGHDKFKEV GTCCNSPVAD VEAKISGSNV  120
ILRTVSKRIP GQLSRIISVL EKFSFEILHL NISSMEDTVL YSFVIKIGLE CQLSLEELAM  180
EVQQSFCFQS VYAKETVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.11e-85bHLH family protein