PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027118962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GATA | ||||||||
Protein Properties | Length: 291aa MW: 32034.6 Da PI: 6.8482 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.8 | 6.4e-18 | 208 | 242 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C++ +Tp+WR gp g+ktLCnaCG++y++ +l XP_027118962.1 208 CLHCQADQTPQWRAGPMGPKTLCNACGVRYKSGRL 242 99*****************************9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence |
MDALHNPDVA GAAAGCFMLD GEDDLLNFSL DDGEEEKENK NPSPFLKDPY SFSPSNTLIS 60 HQDDDLSRSP SFPEFEEELE WLSNKDAFPA VETCFDLLSE TPDFDGLNHQ SPVSVLENSS 120 SSSNSNGSNS SNGSAVMSCC GNLKVPSSFP VRPRSQRRRR KRRSGFGDLP SQEWQWWNHV 180 NIKSNRQEVA LPPVPVKANT SATIGRRCLH CQADQTPQWR AGPMGPKTLC NACGVRYKSG 240 RLVPEYRPAS SPTFSAALHS NSHRKIVEMR RQKQPGMGGI MANGSCGYRV G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 163 | RRRRKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 5e-41 | GATA family protein |