PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027118255.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 300aa    MW: 34108.4 Da    PI: 6.5338
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027118255.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.41.7e-2041501128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy....kvePwdLpk..............kvkaeekewyfFskrdkkya.tgkrknr 76 
                     lp G+rF Ptdeel+ +yLk+k+++++l+ +++  e diy    ++ Pw L                kv  ++k +y F+k  +  + ++k+k+r
  XP_027118255.1   4 LPFGVRFCPTDEELIIYYLKNKATEQPLPSDKFTIERDIYgeneTATPWILFGedapwqtpvvdafgKVFVHQKVLYVFTKLLNVGKfSDKNKKR 98 
                     689************************9998876677877322235799995246788888888777555588899****988876636788999 PP

             NAM  77 atksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++  g W++    ++++++   + +l+g k+t+++ +   ++ +  +W+mhey+l
  XP_027118255.1  99 IAGCGNWHNNSAPEPIMKNwgwGYQLIGNKRTFTYRS---KEETVGHWTMHEYEL 150
                     99****************99999999********974...444568*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MDNLPFGVRF CPTDEELIIY YLKNKATEQP LPSDKFTIER DIYGENETAT PWILFGEDAP  60
WQTPVVDAFG KVFVHQKVLY VFTKLLNVGK FSDKNKKRIA GCGNWHNNSA PEPIMKNWGW  120
GYQLIGNKRT FTYRSKEETV GHWTMHEYEL AGAGLQGINL ENNYVLCKIK RDDSKSSKGG  180
RLLSWKNSRF AMVQFNEDDE VIVEPMMGNS VPKATLGKRK SVSGEGKQPE ETENFRRGYI  240
QYRGDGIESS GLKLVQEESS ASVNNYSNPF DLKNVKQVNS NGDSSSTMDD LFQFQPVNLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.18e-13NAC family protein