PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027118192.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 188aa    MW: 21599.7 Da    PI: 6.5701
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027118192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000153557123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H++ H
  XP_027118192.1 35 YECTFCKRGFTNAQALGGHMNIH 57
                    99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MGSGKHSSNS ETSSEEIDQP EKLMNDDNAG IGRSYECTFC KRGFTNAQAL GGHMNIHRKD  60
KAKAKQKNHQ QQDRNSITNT SHEDYMSTSP KYFAPNPIEQ QQCSTAMAAY MSYQLYFPSS  120
NNSYLHAYHQ YHDLPSPRSE HHLSMHEYHM DQTLSRQIGP PRMEDGDEMK IARTENEVDL  180
ELRLGHYP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-13C2H2 family protein