PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027118104.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 220aa    MW: 24294.9 Da    PI: 5.0958
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027118104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS103.62.9e-32582164160
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.fsev...sPilkf 93 
                     lL ++A  +s++++  a++lL+  ++ as +g+p+qR++ yf+eAL+++++  ++ e+ +  p  + ++ +++e++ +l+  + e+    P+ ++
  XP_027118104.1  58 LLQAAAFNFSNQQFVHARNLLNICQDSASLNGNPIQRVVYYFVEALQEKITMeTGGEVLQEKPEGNRRDLTVEEAFLSLHPaLMEChakLPFCRI 152
                     344555567888888************************************944445554444444443333333333322565552237***** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeelee 160
                     +++ta qaIl+ v +++r+H iD++i+ G+QW  L+qaLa+R e p   l+iT+vg+    ske++ee
  XP_027118104.1 153 TQFTAIQAILDNVGSAKRIHLIDLGIKCGTQWSVLMQALANRHECPLeLLKITAVGP----SKEMIEE 216
                     *******************************************6665499******9....5555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MPEQSPTSEP SNISCSLSLE LSTVDIIKMA KKIGSGDLSY VKSAASPENY KDFELALLLQ  60
AAAFNFSNQQ FVHARNLLNI CQDSASLNGN PIQRVVYYFV EALQEKITME TGGEVLQEKP  120
EGNRRDLTVE EAFLSLHPAL MECHAKLPFC RITQFTAIQA ILDNVGSAKR IHLIDLGIKC  180
GTQWSVLMQA LANRHECPLE LLKITAVGPS KEMIEEIVSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-15GRAS family protein