PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027117577.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 1002aa MW: 109897 Da PI: 4.9383

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027117577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.3	3.2e-28	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF +++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ XP_027117577.1 598 AEKHVSLSVLQQYFCGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 649 5899**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1002 aa Download sequence
MEYPYPSTEK GGFWASPRAQ KDGNASFDGG TRTWNLEDSF QELMNFDAYA GWCNSPSSAD 60 QFFGPFGLSP MSSSYVPLDG MNFGEQSTEG FRVADGETGG SSSSGGEDKM IRQDLENRFH 120 VPMDTASEGV DLTGRNDKSC RQHDDDVVNT VNSLISRPPS QTLPEKMLKA LSLFKESAGG 180 GILAQVWIPI RDGNTYILST CEQPYLLDQA LSGYREVSRA FTFSAEVKPG SFLGLPGRVF 240 ASRVPEWTSN VMYYKEAEYL RVQHALDHEV CGSIAFPVFE DDSFDLSCCA VLELVTIKEQ 300 PHFDLEMDSV CRALQAVNLR SAAPSRLYPQ CLSKNQRVAL AEITDVLRAV CHAHRLPLAL 360 TWIPCSYTEA VDEPVKLRVG GSAASSNENS ILCIEDTACY VNDQSMEGFV HVCMEHYLEE 420 GQGIAGKALQ SNHPFFFPDV KDYHISEYPL VHHARKFNLN AAVAIRLRST YTGDDDYILE 480 FFLPVNMRGS SEQQLLLNNL SSTMQRICRS LRTVSDAELI GGDDIKVELP NRSVNNLPTT 540 ALPRNCSQQS LLNSNSSSSD HLFTGTSETK SSHKGDTASG EQAMAGPKRQ SEKKRSTAEK 600 HVSLSVLQQY FCGSLKDAAK SIGVCPTTLK RICRQHGILR WPSRKINKVN RSLKKIQSVL 660 DSVQGVEGGL KFDPATGGLL AGGSVIQDFD TRKGMLCPVK SASLRNPDSL TQDTTSACQT 720 YCMDGENSVV KMEECDMDAI EVQNANMLSP NSRKEASKLQ SSTVVCCNDT KLAALDAGQS 780 QPASPLPYSG NASLDSYLKK SSDKEWCLNS DRQKLDKSDH QLISLSSSSL VVVDEIEAKM 840 KSDNGLDGDD GGLEYNQPTS SSMTDSSNGS GSMMNGSSSS SRNFGEQKHS KNESNFGDSS 900 SKLTAKATYK DDTIRFKFDP SAGCLQLYEE ISKRFNLQLG VFQLKYMDDE EEWVMLVSDA 960 DLQECLEILD FLGTRAVKFL VRDTPQTIGS SGSSNCYLTG GS

Sequence ? help Back to Top

Protein Sequence Length: 1002 aa Download sequence

MEYPYPSTEK GGFWASPRAQ KDGNASFDGG TRTWNLEDSF QELMNFDAYA GWCNSPSSAD  60
QFFGPFGLSP MSSSYVPLDG MNFGEQSTEG FRVADGETGG SSSSGGEDKM IRQDLENRFH  120
VPMDTASEGV DLTGRNDKSC RQHDDDVVNT VNSLISRPPS QTLPEKMLKA LSLFKESAGG  180
GILAQVWIPI RDGNTYILST CEQPYLLDQA LSGYREVSRA FTFSAEVKPG SFLGLPGRVF  240
ASRVPEWTSN VMYYKEAEYL RVQHALDHEV CGSIAFPVFE DDSFDLSCCA VLELVTIKEQ  300
PHFDLEMDSV CRALQAVNLR SAAPSRLYPQ CLSKNQRVAL AEITDVLRAV CHAHRLPLAL  360
TWIPCSYTEA VDEPVKLRVG GSAASSNENS ILCIEDTACY VNDQSMEGFV HVCMEHYLEE  420
GQGIAGKALQ SNHPFFFPDV KDYHISEYPL VHHARKFNLN AAVAIRLRST YTGDDDYILE  480
FFLPVNMRGS SEQQLLLNNL SSTMQRICRS LRTVSDAELI GGDDIKVELP NRSVNNLPTT  540
ALPRNCSQQS LLNSNSSSSD HLFTGTSETK SSHKGDTASG EQAMAGPKRQ SEKKRSTAEK  600
HVSLSVLQQY FCGSLKDAAK SIGVCPTTLK RICRQHGILR WPSRKINKVN RSLKKIQSVL  660
DSVQGVEGGL KFDPATGGLL AGGSVIQDFD TRKGMLCPVK SASLRNPDSL TQDTTSACQT  720
YCMDGENSVV KMEECDMDAI EVQNANMLSP NSRKEASKLQ SSTVVCCNDT KLAALDAGQS  780
QPASPLPYSG NASLDSYLKK SSDKEWCLNS DRQKLDKSDH QLISLSSSSL VVVDEIEAKM  840
KSDNGLDGDD GGLEYNQPTS SSMTDSSNGS GSMMNGSSSS SRNFGEQKHS KNESNFGDSS  900
SKLTAKATYK DDTIRFKFDP SAGCLQLYEE ISKRFNLQLG VFQLKYMDDE EEWVMLVSDA  960
DLQECLEILD FLGTRAVKFL VRDTPQTIGS SGSSNCYLTG GS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein